genome.fa.s14301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014301.1 Corchorus olitorius cultivar O-4 contig14334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76210

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337--3858	332	10.6	333	86	3	4746	34	14	16	34	1.90
337--4083	994	3.8	995	86	5	4983	34	14	16	34	1.90
5182--5314	38	3.4	38	78	9	142	23	13	18	44	1.85
5294--5333	19	2.0	20	90	4	64	12	10	12	65	1.49
5182--5445	137	1.9	140	81	6	322	23	15	18	42	1.89
5314--6333	42	24.3	41	74	14	648	22	16	18	41	1.90
5227--5404	96	1.8	96	85	3	248	21	14	19	44	1.85
5319--5566	38	6.2	38	73	13	155	20	15	20	43	1.87
5552--5587	17	2.1	18	89	5	56	13	11	5	69	1.34
5516--5625	55	1.9	57	90	7	179	20	14	15	50	1.79
5480--5658	97	1.9	94	87	5	261	18	16	18	46	1.85
5570--5935	83	4.6	78	85	7	456	22	17	18	41	1.90
5964--6333	41	8.8	42	86	7	446	24	16	18	40	1.91
5954--6333	87	4.5	82	84	8	478	24	16	17	40	1.90
6419--6455	18	2.0	19	94	5	67	16	16	10	56	1.66
6246--6527	97	2.9	97	82	4	327	24	17	17	41	1.89
6438--6684	41	6.3	37	82	10	262	24	18	18	38	1.92
6457--6683	79	2.8	80	84	9	254	24	18	19	37	1.94
6438--6684	116	2.1	116	86	6	338	24	18	18	38	1.92
6711--7149	41	10.7	41	80	9	443	26	17	17	37	1.93
7140--7178	19	2.1	19	95	0	69	12	10	12	64	1.51
7168--7387	42	5.2	42	87	1	298	27	15	18	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7179--7387	83	2.5	83	87	2	292	27	15	18	38	1.91
6457--7379	467	2.0	461	84	4	1192	25	17	18	38	1.92
7605--7642	20	1.9	20	88	0	58	39	18	23	18	1.92
12328--12370	14	3.5	12	87	12	52	88	0	2	9	0.60
12343--12398	6	9.3	6	90	5	51	82	0	17	0	0.68
12363--12399	3	12.0	3	88	5	56	70	0	29	0	0.88
14958--15032	30	2.6	29	75	6	80	16	21	16	46	1.83
15103--15190	32	2.8	32	85	0	113	22	27	22	27	1.99
16696--16731	15	2.6	14	87	12	56	61	2	0	36	1.11
16709--17200	252	1.9	255	93	1	855	34	18	20	26	1.96
24948--25002	26	2.1	26	89	0	83	41	27	5	25	1.77
27319--27345	2	13.5	2	100	0	54	48	0	0	51	1.00
51080--51117	20	2.0	20	84	5	51	21	2	5	71	1.19
55223--55247	13	1.9	13	100	0	50	24	8	24	44	1.80
58464--58499	18	1.9	19	88	5	56	58	8	11	22	1.59
60176--60203	10	2.8	10	100	0	56	53	21	7	17	1.67
63439--63499	24	2.5	24	84	10	88	6	39	0	54	1.27
64459--64484	13	2.0	13	100	0	52	84	15	0	0	0.62
65603--65660	19	2.9	19	84	5	71	27	24	12	36	1.91
69353--69715	123	3.1	118	92	5	594	39	6	6	47	1.57
69353--69715	120	3.1	114	90	8	550	39	6	6	47	1.57
73619--73652	14	2.4	14	90	0	59	61	0	2	35	1.11

Tables:   1

The End!