Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014302.1 Corchorus olitorius cultivar O-4 contig14335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43285
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--35 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36 GTTGATAGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2820 original size:77 final size:77
Alignment explanation
Indices: 2693--2845 Score: 297
Period size: 77 Copynumber: 2.0 Consensus size: 77
2683 CCTATAATCC
2693 TATTTGATTTATGTACGCTTCAACAATTTGTAAATAGGGAAGCAAATGTATTTGCACATTTTCTA
1 TATTTGATTTATGTACGCTTCAACAATTTGTAAATAGGGAAGCAAATGTATTTGCACATTTTCTA
2758 ACTAAGATTGAT
66 ACTAAGATTGAT
2770 TATTTGATTTATGTACGCTTCAACAATTTGTAAATAGGGAAGCAAATGTATTTGCACATTTTCTA
1 TATTTGATTTATGTACGCTTCAACAATTTGTAAATAGGGAAGCAAATGTATTTGCACATTTTCTA
*
2835 GCTAAGATTGA
66 ACTAAGATTGA
2846 GCTGGATAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (77 bp):
TATTTGATTTATGTACGCTTCAACAATTTGTAAATAGGGAAGCAAATGTATTTGCACATTTTCTA
ACTAAGATTGAT
Found at i:3291 original size:29 final size:29
Alignment explanation
Indices: 3236--3291 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
3226 AAATGTATGT
* *
3236 AAAATAAAACATTAGGATGTGATATGATC
1 AAAATAAAACATTAGGATGTAAAATGATC
*
3265 AAAATAAAAATATTAGG-TGTAAAATGA
1 AAAAT-AAAACATTAGGATGTAAAATGA
3292 CAGTTCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 13 0.57
30 10 0.43
ACGTcount: A:0.54, C:0.04, G:0.16, T:0.27
Consensus pattern (29 bp):
AAAATAAAACATTAGGATGTAAAATGATC
Found at i:4306 original size:23 final size:23
Alignment explanation
Indices: 4266--4311 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4256 TAGAATAATA
*
4266 ATTAATTAAAGTTATATATTATT
1 ATTAATTAAAGTTATATACTATT
*
4289 ATTAATTAAA-TTCTTATACTATT
1 ATTAATTAAAGTT-ATATACTATT
4312 TTGTTATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (23 bp):
ATTAATTAAAGTTATATACTATT
Found at i:17692 original size:21 final size:19
Alignment explanation
Indices: 17667--17724 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
17657 GCTGCTCTAA
17667 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* * *
17688 TAATCTAATATGTACAGTG
1 TAATCTCATCTGTACAGTC
*
17707 TAATCTCGTCTGTACAGT
1 TAATCTCATCTGTACAGT
17725 TGCTAAATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:19781 original size:2 final size:2
Alignment explanation
Indices: 19776--19800 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
19766 ATAGATACAA
19776 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
19801 AGATTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27282 original size:42 final size:42
Alignment explanation
Indices: 27220--27303 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
27210 GCAGCTATGG
27220 GGCTGAGCTTGGCGCGGCTCGGCGGCTTGATCGGAAGTCTGC
1 GGCTGAGCTTGGCGCGGCTCGGCGGCTTGATCGGAAGTCTGC
* ** *
27262 GGCTGAGCTTGGTGTTGCTCGGCGGCTTGGTCGGAAGTCTGC
1 GGCTGAGCTTGGCGCGGCTCGGCGGCTTGATCGGAAGTCTGC
27304 TCTTGCAGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.08, C:0.24, G:0.43, T:0.25
Consensus pattern (42 bp):
GGCTGAGCTTGGCGCGGCTCGGCGGCTTGATCGGAAGTCTGC
Found at i:35818 original size:318 final size:322
Alignment explanation
Indices: 35094--35953 Score: 922
Period size: 330 Copynumber: 2.6 Consensus size: 322
35084 GCATATAGTC
* * ** *
35094 TCCTTGAAATATCTATATTTATGCAAGCAAATCTCAGTTACATTTGATTTAAGGATTTGTTTTTA
1 TCCTTGAAATATCTATATTCAT-CAACCAAATCTCAGACACATTGGATTTAAGGATTTGTTTTTA
* * * * * *
35159 TGAGCATTTGAATCTTGTTTCGATTTTATCAGAAATAAATTCGGAAAAAAATGGAAAAACTATAT
65 CGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAACGATAT
* * * * *
35224 TAGAAACATGAAAAACCCTTTAATTTTTCTGGCGTTGGATTATATA-TTTTTTAGTATTATGG-A
130 TAGAAGCGTGAAAAACCCTTCAATTTTT-TGGCGTTGAATTATATATTTTTTTAGTATTGTGGCA
*
35287 AAAAATTGAGGAAAAACTTTACGGGTCAGTTTTTTTGCAAAATTTTAATAGAAACCGTGTACAAA
194 AAAAATTGAGGAAAAACTTTACGGGTCAGTTTTTTAGCAAAA--TTAATAGAAACCGTGTACAAA
* * * * *
35352 CCATCATGGTTTTTGGTTAAAAACGCGTTCCGGAGTCACGGCTCAATTTTGCATGATTTTTGACG
257 CCA-C-----TTTTGGCTAAAAACGCGTTCAGGAGCCACGGCTCAATATTGAATGATTTTTGACG
*
35417 TAAAGAC
316 TAAAGAA
* * *
35424 TCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATCGTATTTAAGGATTTGTTTTTA
1 TCCTTGAAATATCTATATTCATC-AACCAAATCTCAGACACATTGGATTTAAGGATTTGTTTTTA
* * * *
35489 CGAGCATCTAAATTTTGTTTCGATTTAATTAGAAATTAATTTGGAAAAAAACGGAAAAACGATAT
65 CGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAACGATAT
* * *
35554 TAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTGG
130 TAGAAGCGTGAAAAACCCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTT-T-AGTATTGTGG
* ** *
35619 CAAAAAATTGA-GAAAAACTTTTTCGGGTCAG-TTTTTAGCAGAAA-TCGT-G-TA-CGTGTTAC
192 CAAAAAATTGAGGAAAAAC-TTTACGGGTCAGTTTTTTAGCA-AAATTAATAGAAACCGTG-TAC
* * * *
35678 -GA-C-C-TTTGGCTAAAAACGCGTTTCAGG-GCCTCGGCTCAGTATTGAATGATTTTTGGCAG-
254 AAACCACTTTTGGCTAAAAACGCG-TTCAGGAGCCACGGCTCAATATTGAATGATTTTTGAC-GT
*
35737 AAATAA
317 AAAGAA
* *
35743 TCCTTG-AATATCTATATTCATCTAACCAAATCTCAGACAAATTGGATTTATGGATTTGTTTTTA
1 TCCTTGAAATATCTATATTCATC-AACCAAATCTCAGACACATTGGATTTAAGGATTTGTTTTTA
* *
35807 CGAGCATCTAAATCTTGTTTTGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAATGATA
65 CGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCGG-AAAAAAATGGAAAAACGATA
* * *
35872 TTAGAAGCGTTAAAAACTCTTCAATTTTTTTTGGCGTTGAGTTATATATATTTTTTTAGTATTGT
129 TTAGAAGCGTGAAAAACCCTTCAA--TTTTTTGGCGTTGA-AT-TATATATTTTTTTAGTATTGT
* * *
35937 AGCAAAGAATTGTGGAA
190 GGCAAAAAATTGAGGAA
35954 TTGCAAATCT
Statistics
Matches: 451, Mismatches: 62, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
318 92 0.20
319 87 0.19
320 36 0.08
321 6 0.01
322 12 0.03
325 1 0.00
327 1 0.00
328 5 0.01
329 5 0.01
330 146 0.32
331 11 0.02
332 1 0.00
333 24 0.05
334 24 0.05
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (322 bp):
TCCTTGAAATATCTATATTCATCAACCAAATCTCAGACACATTGGATTTAAGGATTTGTTTTTAC
GAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAACGATATT
AGAAGCGTGAAAAACCCTTCAATTTTTTGGCGTTGAATTATATATTTTTTTAGTATTGTGGCAAA
AAATTGAGGAAAAACTTTACGGGTCAGTTTTTTAGCAAAATTAATAGAAACCGTGTACAAACCAC
TTTTGGCTAAAAACGCGTTCAGGAGCCACGGCTCAATATTGAATGATTTTTGACGTAAAGAA
Found at i:36702 original size:295 final size:298
Alignment explanation
Indices: 36112--36709 Score: 807
Period size: 295 Copynumber: 2.0 Consensus size: 298
36102 AAGGAAAAAC
* *
36112 TTTTTGGGTCAATTTTTGCAAAATGTTAGCCGAAATCGTGTACTAACATCACGGTTTTTTTTGCT
1 TTTTTGGGTCAATTTTTGCAAAATGTTAGCCGAAATCGTGTACT-ACATAACGGATTTTTTTGCT
* * *
36177 AAAAACGCGTTTCGGAGCCCCGGCTCAATTTTGCATGTTTTTTTGGCGTAAAGACTGCTTCAAAT
65 AAAAACGCGTTTCGGAGCCCCGGCTCAATTTTGCATGTATTTTTGGCGTAAAGAATCCTTCAAAT
* ** *
36242 ATCTATATTCATCGAATCAAATCTTAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATTTG
130 ATCTATATTCATCGAACCAAATCCCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTG
* *
36307 AATCTTGTATCGATTTAATTAAAAATAAATTCGGGAAAAAATGGAAAAACGATATTAGAAGCGTG
195 AATCTTGTATCGATTTAATTAAAAATAAATTCGGAAAAAAATGGAAAAACGATATTAAAAGCGTG
* *
36372 AAAAAAACCCTTTAATTTTTTTGATGTTGAATTATATAT
260 AAAAAAACCCTTCAATTTTTTTGACGTTGAATTATATAT
* * * * *
36411 TTTTTGGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTTTACT-CGTAAC-GATTTTTTTGCTA
1 TTTTTGGGTCAATTTTTGCAAAATGTTAGCCGAAATCGTGTACTACATAACGGATTTTTTTGCTA
* * * * *
36474 AAAACG-TTTTGCTGG-GCCTCGGTTCAGTTTTGCATG-ATTTTTGGCGTAAAGAATCCTTGAAA
66 AAAACGCGTTT-C-GGAGCCCCGGCTCAATTTTGCATGTATTTTTGGCGTAAAGAATCCTTCAAA
* *
36536 TCTCTATATTCATCGAACCAAATCCCAGCCACATTGGATATAATGATTT-TTTTTACGAGCATCT
129 TATCTATATTCATCGAACCAAATCCCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCT
* *
36600 GAATCTTGTTTCGATTTAATTAAAAACT-AATTCGGAAAAAAAAATTGAAAAACGATATTAAAAG
194 GAATCTTGTATCGATTTAATTAAAAA-TAAATTCGG--AAAAAAATGGAAAAACGATATTAAAAG
** * *
36664 CGTG-AAAACCCCCTTCAATTTTTTTGGCGTTTAATTATATAT
256 CGTGAAAAAAACCCTTCAATTTTTTTGACGTTGAATTATATAT
36706 TTTT
1 TTTT
36710 CATGAATATT
Statistics
Matches: 263, Mismatches: 31, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
294 46 0.17
295 106 0.40
296 65 0.25
297 6 0.02
299 40 0.15
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (298 bp):
TTTTTGGGTCAATTTTTGCAAAATGTTAGCCGAAATCGTGTACTACATAACGGATTTTTTTGCTA
AAAACGCGTTTCGGAGCCCCGGCTCAATTTTGCATGTATTTTTGGCGTAAAGAATCCTTCAAATA
TCTATATTCATCGAACCAAATCCCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGA
ATCTTGTATCGATTTAATTAAAAATAAATTCGGAAAAAAATGGAAAAACGATATTAAAAGCGTGA
AAAAAACCCTTCAATTTTTTTGACGTTGAATTATATAT
Found at i:40522 original size:330 final size:329
Alignment explanation
Indices: 36411--43285 Score: 6947
Period size: 331 Copynumber: 21.0 Consensus size: 329
36401 AATTATATAT
* * * * * * * *
36411 TTTTTGGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTTTACT---CGTAACGATTTTTTTGCT
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG-GTGTTTGGCT
* * * ** * *
36473 AAAAACGTTTTGCTGGGCCTCGGTTCAGTTTTGCATGATTTTTGGC-GTAAAGAATCCTTGAAAT
65 AAAAACGTGTT-CGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAG-AAAGACTCCTTGAAAT
* * * * * *
36537 CTCTATATTCATCGAACCAAATCCCAGCCACATTGGATATAATGATTT-TTTTTACGAGCATCTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * *
36601 AATCTTGTTTCGATTTAATTAAAAACT-AATTCGGAAAAAAAAATTGAAAAAC-GATATTAAAAG
193 AATCTTGTTTCGATTTAATTAGAAA-TAAATTC-G--AAAAAAA-TGGAAAACTGATATTAGAAG
* *
36664 CGTGAAAACCCCCTTCAATTTTTTTGGCGTTTAATTATATA-TTTTTCATGAATATTGTGGCAAA
253 CGTGAAAA-ACCCTTCAATTTTTTTGGCG-TTAATTATATATTTTTTC-TGAGTATTGTGGCAAA
*
36728 AAATTGA-GAAAAAA
315 AAATTGAGGAAAAAC
* * * *
36742 TTTTTGGGT-A-----AGC----TTTTAGCCGAAATCGTGTACTAACAATCACGG-GTTTTGGTT
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTG-TTTGGCT
* * * * * * *
36796 AAAATGCGT-TTCGAGGTCTCGACTCAGTTTTGCAT-AGTTTTTAGCATAAAGACTCCTTGAAAT
65 AAAA-ACGTGTTCGGGGCCCCGACTCAGTTTTACATGA-TTTTTGGCAGAAAGACTCCTTGAAAT
* * * ** ***
36859 ATCTATATTCATCTAACCAAATCTCATCTACATTGGATTTAAGGATTTGGCTTTGTTAGCATCTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
*
36924 AATCTTGTTTCGATTTAATTAGAAATAAATTCGGGAAAAAAATGGAAAAATGATATT-GAAAGCG
193 AATCTTGTTTCGATTTAATTAGAAATAAATTC--GAAAAAAATGGAAAACTGATATTAG-AAGCG
* * *
36988 TGAAAAAACCCTTCAATTTTTTTGTCGTTGAATTATATA-TTTTTCTGATTATTGTGGCAAAGAA
255 TG-AAAAACCCTTCAATTTTTTTGGCGTT-AATTATATATTTTTTCTGAGTATTGTGGCAAAAAA
**
37052 TTGAGGAAAATT
318 TTGAGGAAAAAC
* * * * *
37064 TTTTCGGGTAAGTTTTTACAAAATTTTAGTCGAAATCGTTTACTCATCACCAACTCACGGTTTTT
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACT-A--ACC-A-TCACGGTGTTT
*** ** ** * *
37129 GGCTAAAAACGTGTTCCTATGTTCCGGGTCAGTTTTACATGATTTTTGGC-GTAAAGACTCATTA
61 GGCTAAAAACGTGTT-CGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAG-AAAGACTCCTTG
* * * * *
37193 AAATTTCTATATTTATCGAACCAAATC-CAAGCCACATTGGATTTAACGATTTGTTTTTACGAGC
124 AAATATCTATATTCATCTAACCAAATCTC-AGCCACAATGGATTTAAGGATTTGTTTTTACGAGC
* * * * *
37257 ATCTGAATCTTGTTTCGATTTAATAACAAATTAATTCGGAAAAAATATCGAAGAA-TGATATTAT
188 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GAAAAAA-ATGGAA-AACTGATATTAG
* * *
37321 AAGCGTAAAAAACCCTTCAATCTTTTTGGCGTTTAATTATATA--TTTTCATAAGTATTGTGGCA
250 AAGCGTGAAAAACCCTTCAATTTTTTTGGCG-TTAATTATATATTTTTTC-TGAGTATTGTGGCA
* * *
37384 AAAAATTAAGAAAAAAAA
313 AAAAATTGAG-GAAAAAC
* **
37402 TTTTCGGGTTAG----T------TTTTAGCCGAAATCGTGTACTAACCATCACGGTAATTGGCTT
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGC-T
* * * * * * *
37457 AAAATGCGT-TTCGGGGGCCTCGACTTAGTTTTGCATGGTTTTTGGCATTAAA-AATCCTTGAAA
65 AAAA-ACGTGTTC-GGGGCCCCGACTCAGTTTTACATGATTTTTGGCA-GAAAGACTCCTTGAAA
* * * * ** * *
37520 TATCAATGTTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGGCTTTACTAGTATCT
127 TATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * *** *
37585 TAATCTTGATTCGATTTAATTATAAATAAATTCAGAAAAATGAAAAAAAAAC-GATGTTAGAAGC
192 GAATCTTGTTTCGATTTAATTAGAAATAAATTC-GAAAAA--AATGGAAAACTGATATTAGAAGC
* * * * * * *
37649 GTAAAAAACCCTTCAATTTTTTTGGCGATAAATAATATATTTTTTCTTAGAATTCTGGAAAAAAA
254 GTGAAAAACCCTTCAATTTTTTTGGCG-TTAATTATATATTTTTTCTGAGTATTGTGG-CAAAAA
37714 ATTGAGGAAAAAC
317 ATTGAGGAAAAAC
* * * *
37727 TATTCAGGTCAGTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* ** * * * *
37792 AAAACGAGTTTCAAGGCCCCGACTCAATTTTGCATGATTGTTGGCAGAAAGACTCTTTGAAATAT
66 AAAACGTG-TTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATAT
* * **
37857 CTAT-TATCATCTAACCAAATCTC-GACCACAATGGATTAAAGGATTTGTTTATATAAGCATCTG
130 CTATAT-TCATCTAACCAAATCTCAG-CCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * * *
37920 AATTTTGTTTCGATTTAATTAGAGATAAATTGGAAAAAACAAATGGAAAAATGATATCAGAAGCG
193 AATCTTGTTTCGATTTAATTAGAAATAAATTCG--AAAA-AAATGGAAAACTGATATTAGAAGCG
* * * * * * *
37985 TGAAAAACCCTTCAATTTTTTTTGGTGTTGACTTATATATTTTTTATGTGTATAGAGGCAAAGAA
255 TGAAAAACCCTTCAA-TTTTTTTGGCGTT-AATTATATATTTTTTCTGAGTATTGTGGCAAAAAA
*
38050 TTGAGGAAAAAT
318 TTGAGGAAAAAC
* * * * *
38062 TTTTCGAGTCAGTTTTTGTAAAATTTTAGCAGAAATCGTTTACT---CATCACGGTTTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
** * *
38124 AAAACACGTTCCGGGCTCCCGACTCAGTTTTGA-AT-ATTTTTAGC-GTAAAGACTCCTTGAAAT
66 AAAACGTGTTCGGGGC-CCCGACTCAGTTTT-ACATGATTTTTGGCAG-AAAGACTCCTTGAAAT
* * * * * * * * * *
38186 ATCTATATT-TTCGAACCAAACCCCATCCACATTGGATTTAACGATTTGTTTTTATGAGCTTTTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * *
38250 AATCTTGTTTCGATTTGATTAGAAATAAATTCCG-AAAAAATGGAGAACCGATATGAGAAGCGTG
193 AATCTTGTTTCGATTTAATTAGAAATAAATT-CGAAAAAAATGGAAAACTGATATTAGAAGCGTG
* * * *
38314 AAAACCCCTTCAATTTTTTTGATGC-TGAATTATATATATTTTATGAGTATTGTGGCAAAAAATT
257 AAAAACCCTTCAATTTTTTTG--GCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT
38378 GAGGAAAAAC
320 GAGGAAAAAC
38388 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * *
38453 AAAACGTGCTTCGGGGGCCGGA-TCAGTTTTACATGATTATTGGCAGAAAGACTCATTGAAATAT
66 AAAACGTG-TTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATAT
* * * * **
38517 CTAT-TATCATCTAACCAAATATAAGCCACAATGGATTAAAGGATTTGTTTATATAAGCATCTGA
130 CTATAT-TCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * * *
38581 ATCTTGTTTCGATTTAATTAGAGATAAATTTGAAAAAAAATGGAAAAATGATATCAGAAGCGTGA
194 ATCTTGTTTCGATTTAATTAGAAATAAATTCG-AAAAAAATGGAAAACTGATATTAGAAGCGTGA
* * * * * * * * *
38646 AAAACCCTTCAATCTTTTTGGTGTTGACTTAAATAATTTTTCTGTGTATAGTTGCAAAGAATTGA
258 AAAACCCTTCAATTTTTTTGGCGTT-AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGA
* *
38711 GGAATAAT
322 GGAAAAAC
* ** * * *
38719 TTTTCGGGTCAGTTTTTACAAAATTTTAGCATAAATCGTTTACT---CATCACGGTTTTTGGCCA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* **
38781 AAAACGTGTTTC-GGGCTCCCGGCTCAGTTTTGA-AT-ATTTTCAGC-GTAAAGACTCCTTGAAA
66 AAAACGTG-TTCGGGGC-CCCGACTCAGTTTT-ACATGATTTTTGGCAG-AAAGACTCCTTGAAA
* * * * * * * * *
38842 TATCTATATTCATCGAACCAAACCCCATCCACATTGGATTTAATGATTTGTTTTTATGAGCTTTT
127 TATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCT
* * *
38907 GAATCTTGTTTCGATTTGATTAGAAATAAATTCCG-AAAAAATGGAAAACCGATATGAGAAGCGT
192 GAATCTTGTTTCGATTTAATTAGAAATAAATT-CGAAAAAAATGGAAAACTGATATTAGAAGCGT
* *
38971 GAAAACCCCTTCAATTTTTTTGATGC-TAAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAT
256 GAAAAACCCTTCAATTTTTTTG--GCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAT
39035 TGAGGAAAAAC
319 TGAGGAAAAAC
39046 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
*** * * *
39111 AAAACGTGCTTCGGGGTATCGCCTCAGTTTTACAT-ATTTTTTTGGCAGAAAGACCCCTTAAAAT
66 AAAACGTG-TTCGGGGCCCCGACTCAGTTTTACATGA--TTTTTGGCAGAAAGACTCCTTGAAAT
* * * * * * *
39175 ATCTATATTCATTTAACCAAATATCAGCCACAATGGATTAAAGGATTTGGTTTTACAAGTAACTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * * *
39240 AATCTTGTTTCGATTTAATTAGAAATAAATTCGAATAAAATGGAAAACCGATATTAAAAGCTTAA
193 AATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGA
* * * * * *
39305 AAAACCCTTCAATATTTTTGGCGTTAATTATTTATTTTTTCTTATTATTCTGGCAAAAAATTAAG
258 AAAACCCTTCAATTTTTTTGGCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG
*
39370 CAAAAAC
323 GAAAAAC
* * *
39377 TTTTCGGGTCAGTTTTTGCAAAAATTTTAGCCGAAATAGTGTACTAACCGTCACGGTGTTGGGCT
1 TTTTCGGGTCAGTTTTTGC-AAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCT
* * * * *
39442 AAAAACGCGTTCCGGGGCCCATG-CTCAATTTTACATGATTTTTTGCAGAAAGACTCATTGAAAT
65 AAAAACGTGTT-CGGGGCCC-CGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAAT
* * * *
39506 ATCTATACTCATCTAACCAAATCTTAGCCACAATGGATTGAATGATTTGTTTTTACGAGCATCTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* *
39571 AATCTTGTTTCGATTTAACTAG----AAA-T------AAATGGAAAAATGATATTAGAAGCGTGA
193 AATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGA
* * * * * * *
39625 AAAACACTTCAATTTTTTTGGTGTTGACTTATATATTTTTTCCGTGTATAGTGGCAAAGAATTGA
258 AAAACCCTTCAATTTTTTTGGCGTT-AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGA
**
39690 GGAAAATT
322 GGAAAAAC
* * * *
39698 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATAGTTTGCT---CATCACGGTTTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * *
39760 AAAACGCGTTCCGGGCTCCC-AGCTCAGTTTTGA-ATGATTTTTAGC-GTAAAGACTCCTTTAAA
66 AAAACGTGTTCGGGGC-CCCGA-CTCAGTTTT-ACATGATTTTTGGCAG-AAAGACTCCTTGAAA
* * * * * * * * *
39822 TATCTATATTCATCGAACCAAACCCCATCCACATTGGATTTAACGATTTGTTTTTATGAGCTTTT
127 TATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * *
39887 GAATCTTGTTTCGATTTGATTAGAAATAAATTCTG-AAAAAATGGAAAACAGATATGAGAAACGT
192 GAATCTTGTTTCGATTTAATTAGAAATAAATTC-GAAAAAAATGGAAAACTGATATTAGAAGCGT
* * * * *
39951 GAAAACCCCTTCAATTTTTTTGATGC-TGAATAATATATTTTTTCTGAGTGTTGTGGCAAATAAT
256 GAAAAACCCTTCAATTTTTTTG--GCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAT
40015 TGA-GAATAAAC
319 TGAGGAA-AAAC
* * * * *
40026 TTTTCGGGTAAGTTTTTGGAAAATTTTAGCCAAAATCGTGTACTAACCATCACAGTGTTTGGCTG
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * *
40091 AAAACGTTCTTTGGGGCCCCGACTCAGTTTTACGTGATTTTTGGCAGAAAGACACCTTGAAATAT
66 AAAACG-TGTTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATAT
* * * * *
40156 TTATATTCATTTAACCAAATCTCAGCCACAATGGATTAAAAGATTTGTTTTTACGAGAATCTGAA
130 CTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
*
40221 TCTTGTTTTGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAAA
195 TCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAAA
* * * * * *
40286 AACCCTTCAATATTTTTGGCATTAATTATTTATTTTTTCTTAGTATTCTGG-AAAAATATTGTGG
260 AACCCTTCAATTTTTTTGGCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAA-ATTGAGG
**
40350 ATTAAC
324 AAAAAC
* * * *
40356 TTTTCGGGTCAGTTTTCGCAAAATTTTACCCGAAATTGTGAACTAACCATCACGGTGTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * *
40421 AAAACGTGTTCGGGGGCCCCTG-CTCAATTTTAAATGATTTTTGGCAGAAAGACTCATTGAAATA
66 AAAACGTGTTC-GGGGCCCC-GACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATA
* *
40485 TCTACATTCATCTAACCAAATCTCAGCCACAATGGATTTGAGGATTTGTTTTTACGAGCATCTGA
129 TCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * * *
40550 ATCTGGTTTCGATTTAACTAGAAATAAATTCGAAACAAATGGAAAAATGATATTAGAAGCGTGAA
194 ATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAA
* *
40615 AACCCCTTCAATTTTTTTGATGCAG--AATAATATATTTTTTCTGAGTATTGTGGCAAAAAATTG
259 AAACCCTTCAATTTTTTTG--GC-GTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG
*
40678 AGGAAAAAA
321 AGGAAAAAC
* * * * *
40687 TTTTCGGGTCGGTTTTTGCAAAATTTTAGCTGAAATCCTATACTAACCATCACGGTGTTTGCCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
*
40752 AAAACGTGCTTCGGGGCCCCGGCTCAGTTTTACATGA-TTTT--------G------T---AT-T
66 AAAACGTG-TTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATAT
* * * *
40798 C---A-T--T-TAACCAATTCTCAGCCACAATGGAATAAAAGATTTGTTTTTACGAGCATCTGAA
130 CTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
* *
40856 TCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAAATAGAAAACCGATATTAGAAGCGTGAA
195 TCTTGTTTCGATTTAATTAGAAATAAATTCG-AAAAAAATGGAAAACTGATATTAGAAGCGTGAA
** * * * * *
40921 AAACCCTTCAAAATTTTTGGCGTTAATTATTTATTTTTTCTTAGAATTCTGACAAAAAATTGAGG
259 AAACCCTTCAATTTTTTTGGCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
40986 AAAAAC
324 AAAAAC
* * *
40992 TTTTCGGGTAAGTTTTTGCAAAATTTTTGCCGAAATCGTGTACTAACCATCACAGTGTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * * * *
41057 AAAACGCGTTCTGGGGCCCCGACCCAATTTTACATGATCTTTGGCGGAAAGACTCATTGAAATAT
66 AAAACGTGTTC-GGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATAT
* *
41122 CCATATTCATCTAACCAAATCTCAGCCACAATGGATTTGAGGATTTGTTTTTACGAGCATCTGAA
130 CTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * * * *
41187 TCTCGTTTCGATTTAACTAGAAATAAATTCGAAAAAAATGAAAAAATGATATTAGACGCGTGAAA
195 TCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAAA
* * * * *
41252 AACCATTCAATTTTGTTGATGC-TGAATAATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAA
260 AACCCTTCAATTTTTTTG--GCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG
41316 GAAAAAC
323 GAAAAAC
* * * *
41323 TTTTCGGGTCAGGTTATGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTTGTTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * * *
41388 AAAGCGCT-TTCCGGGGCCCCGTA-TCAATTTAACATGATCTTTGGCAGAAAGACTCATTGAAAT
66 AAAACG-TGTT-CGGGGCCCCG-ACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAAT
* *
41451 ATCAATATTCATCTAACCAAATCTCAGCCACAATGGATTAAAGGATTTGTTTTTACGAGCATCTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* *
41516 AATCTTGTTTCGATTTAACTAGAAATAAATTCGAAAAAAATGGAAAAATGATATTAGAAGCGTGA
193 AATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGA
* * * * *
41581 AAATCCATTCAATTTTTTTGATGC-TGAATAATATATTGTTTCTGAGTATTGTGGCAAAAAATTG
258 AAAACCCTTCAATTTTTTTG--GCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG
*
41645 AGGAAAAAA
321 AGGAAAAAC
* * *
41654 TTTTCGGGTCAGTTTTTGCAAAATTTTATCTGAAATCGTGTACTAACCATCACGGTGTTTGGCGA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * *
41719 AAAACGTGCTTCGGGGTCACGGCTCAGTTTTAAATGATTTTTGGCAGAAAGACAT-CTTGAAATA
66 AAAACGTG-TTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGAC-TCCTTGAAATA
* * * * *
41783 TCTATATTCATTTAACCAATTCTCAGCCACAATGGATTAAAAGATTTGTTTTTACGAGTATCTGA
129 TCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGA
*
41848 ATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACCGATATTAGAAGCGTGAA
194 ATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAA
* * * *
41913 AAATCCTTCAATATTTTTGGTGTTAATTA-ATTATTTTTTCTGAGTATTCTGGCAAAAAATTGAG
259 AAACCCTTCAATTTTTTTGGCGTTAATTATA-TATTTTTTCTGAGTATTGTGGCAAAAAATTGAG
*
41977 GAAAAAAA
323 G-AAAAAC
* * * * *
41985 GTTTCGGGTCAG---TTGCAAAAGTTTAGCTGAAATCGTGTACTAACAATCACGGTGTTTGTCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * * *
42047 AAAACGCGTTCCGGGGCCCTGACTCAATTTTACATGATCTTTT-GCAGAAAGACACATTGAAATA
66 AAAACGTGTT-CGGGGCCCCGACTCAGTTTTACATGAT-TTTTGGCAGAAAGACTCCTTGAAATA
* * *
42111 TCTATATTCATATAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAACATTTGA
129 TCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGA
* *
42176 TTCTTGTTTCGATTTAACTAGAAATAAATTCGAAAAAAAATGG-AAA---A-A-T-G-A---T--
194 ATCTTGTTTCGATTTAATTAGAAATAAATTCG-AAAAAAATGGAAAACTGATATTAGAAGCGTGA
* ** * * *
42228 ---A---TT-AATTTTTTAGATGTTGAATAATATATTTTTTCAGAGTATTGTGGAAAAAAATTGA
258 AAAACCCTTCAATTTTTTTGGCGTT-AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGA
*
42286 GGAAAAAAA
322 GG-AAAAAC
* * * * *
42295 TTTTCAGGTCAGTTATTGCAAAATTTTAGCTGAAATCCTGTACTAACCATCACGATGTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
*
42360 AAAACGTGCTTCGGGGCCCCGGCTCAGTTTTACATGATTTTTGGCAGAAAGACAT-CTTGAAATA
66 AAAACGTG-TTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGAC-TCCTTGAAATA
* * * * *
42424 TCTATATTCATTTAACCAATTCTCAGCCACAATGGATTAAAAGATTTGTTTTTACGAGTATCTGA
129 TCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGA
*
42489 ATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACCGATATTAGAAGCGTGAA
194 ATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAA
* * * * * *
42554 AAACCCTTCAATATTTTTGGCGTTAATTATTTCTTTTTTCTTAGTATTTTGGCAAAAAAATGAGG
259 AAACCCTTCAATTTTTTTGGCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
*
42619 ATAAAC
324 AAAAAC
* * * *
42625 TTTTCGGGTCAATTTTTTCAAAATTTTACCCGAAATCGTGAACTAACCATCAAGGATTCACGGTG
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAA-C--C----A-TCACGGTG
* * *
42690 TTTGGCTAAAAACGTGTTCTGGGGCCCCTG-CTCAATTTTACATGATTTTTCGCAGAAAGACTCA
58 TTTGGCTAAAAACGTGTTC-GGGGCCCC-GACTCAGTTTTACATGATTTTTGGCAGAAAGACTCC
* * *
42754 TTGAAATATCTACATTCATCTAACCAAATCTCAGCCACAATGGACTAAAGGATTAT-TTTTTACG
121 TTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATT-TGTTTTTACG
* * *
42818 AGCATCTGAATCTTGTTTCGATTTAACTAGAAATAAATTCG-AAAAAATAAGAAAAATGATATTA
185 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAAT-GGAAAACTGATATTA
* * * * * * * * *
42882 GAAACATGAAAAACTCTTCACTTTTTTTGGTGTTGACTTATATTTTTTTTCTGTGTATAGTGGCA
249 GAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTT-AATTATATATTTTTTCTGAGTATTGTGGCA
* *
42947 AAGAATTGAGGAAAAAA
313 AAAAATTGAGGAAAAAC
* * * *
42964 TTTTCGGGTCAGTTTTTACAAAATTTTAGTCGAAATCGTTTACT---CATCACGGTTTTTGGCTA
1 TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
* * * * * * * *
43026 AAAACGCGTTCCGGGCTCCCGGCTCAGTTTTTA-ATGATTTTTAG-TGTAAATACTCTTTGAAAA
66 AAAACGTGTTCGGGGC-CCCGACTCAG-TTTTACATGATTTTTGGCAG-AAAGACTCCTTGAAAT
* * * * * * * * * *
43089 ATCTATATTCATCGAACCAAACCCCATCAACATTGGATTTAACGATTTGTTTTTATGAGCTTTTG
128 ATCTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * *
43154 AATCTTGTTTCGATTTGAA-TAGAATTAAATTCCG-AAAAAATGGAAAACAGATATGAGAAGCGT
193 AATCTTGTTTCGATTT-AATTAGAAATAAATT-CGAAAAAAATGGAAAACTGATATTAGAAGCGT
** ** * *
43217 GAAATCCCCTTCAATTTTTTTTATTC-TGAATAATATATTTTTTCTGAGTATTGTGGCAAAAAAT
256 GAAAAACCCTTCAA-TTTTTTT-GGCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAT
43281 TGAGG
319 TGAGG
Statistics
Matches: 5454, Mismatches: 836, Indels: 511
0.80 0.12 0.08
Matches are distributed among these distances:
303 1 0.00
304 5 0.00
305 204 0.04
306 49 0.01
308 1 0.00
309 13 0.00
310 54 0.01
311 1 0.00
312 16 0.00
313 188 0.03
314 3 0.00
316 8 0.00
317 134 0.02
318 3 0.00
319 1 0.00
320 70 0.01
321 106 0.02
322 152 0.03
323 73 0.01
324 183 0.03
325 39 0.01
326 105 0.02
327 182 0.03
328 657 0.12
329 124 0.02
330 599 0.11
331 1355 0.25
332 305 0.06
333 13 0.00
334 127 0.02
335 125 0.02
336 39 0.01
337 90 0.02
338 350 0.06
339 79 0.01
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (329 bp):
TTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTGTTTGGCTA
AAAACGTGTTCGGGGCCCCGACTCAGTTTTACATGATTTTTGGCAGAAAGACTCCTTGAAATATC
TATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAAT
CTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAACTGATATTAGAAGCGTGAAAA
ACCCTTCAATTTTTTTGGCGTTAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAA
AAAC
Done.