Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014310.1 Corchorus olitorius cultivar O-4 contig14343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:975 original size:7 final size:8

Alignment explanation


    Indices: 949--983  Score: 54
    Period size: 8  Copynumber: 4.5  Consensus size: 8

        939 GACAATTGAG

                    
        949 TTTTTCCC
          1 TTTTTCCC

             *      
        957 -CTTTCCC
          1 TTTTTCCC

                    
        964 TTTTTCCC
          1 TTTTTCCC

                    
        972 TTTTTCCC
          1 TTTTTCCC

                
        980 TTTT
          1 TTTT

        984 AATTTCTTTA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
   7    6  0.25
   8   18  0.75

ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63


Consensus pattern (8 bp):   
TTTTTCCC

Done.