Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014315.1 Corchorus olitorius cultivar O-4 contig14348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8426
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:7108 original size:25 final size:25

Alignment explanation


    Indices: 7065--7173  Score: 118
    Period size: 25  Copynumber: 4.5  Consensus size: 25

       7055 TTCACTAACA

                *                    
       7065 GCCTCAAATTGATACTAGGCCATCG
          1 GCCTAAAATTGATACTAGGCCATCG

            *             *          
       7090 ACCTAAAATTGATATTAGGCCATCG
          1 GCCTAAAATTGATACTAGGCCATCG

                           *          
       7115 GCCTAAAATTGA-ATTTAGG-C--CG
          1 GCCTAAAATTGATA-CTAGGCCATCG

                   *           *    *
       7137 GCCTAAATTTGATACTAGGTCATCC
          1 GCCTAAAATTGATACTAGGCCATCG

                        
       7162 GCCTAAAATTGA
          1 GCCTAAAATTGA

       7174 AGGCCAACGG


Statistics
Matches: 71,  Mismatches: 8, Indels: 10
        0.80            0.09        0.11

Matches are distributed among these distances:
  22   17  0.24
  23    2  0.03
  24    2  0.03
  25   50  0.70

ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28


Consensus pattern (25 bp):   
GCCTAAAATTGATACTAGGCCATCG

Done.