Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014316.1 Corchorus olitorius cultivar O-4 contig14349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35456

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3429--3464
18
2.0
18
88
0
54
13
13
22
50
1.77
3659--4158
30
17.1
30
90
4
600
31
20
18
30
1.96
8575--8627
27
2.0
26
82
10
63
16
15
5
62
1.51
11880--12025
31
4.7
31
85
0
195
19
23
23
32
1.97
20776--20858
42
2.0
42
92
4
141
30
9
14
45
1.77
22101--22135
3
11.7
3
100
0
70
31
0
0
68
0.90
25380--25417
2
19.0
2
100
0
76
50
0
0
50
1.00
26002--26104
41
2.5
40
77
17
111
38
12
11
36
1.80
25881--26333
226
2.0
228
93
0
784
32
15
13
39
1.86
26237--26342
41
2.6
41
83
5
142
36
14
15
33
1.87
28496--28525
1
30.0
1
100
0
60
100
0
0
0
0.00
30910--30938
11
2.6
11
100
0
58
31
6
24
37
1.82
32475--32574
51
2.0
50
84
9
132
55
14
5
26
1.59
33752--33841
42
2.2
42
89
2
137
40
18
6
34
1.77

Tables:   1

The End!