Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014319.1 Corchorus olitorius cultivar O-4 contig14352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68186

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9986--10027
20
2.1
20
100
0
84
23
0
21
54
1.44
12184--12215
16
2.0
16
100
0
64
25
18
18
37
1.94
15301--15333
16
2.1
16
94
0
57
39
18
15
27
1.90
18887--18928
21
2.0
21
90
0
66
33
14
9
42
1.78
27690--27755
36
1.9
34
87
9
98
51
4
15
28
1.63
27704--27809
57
1.9
54
92
5
176
51
4
16
26
1.64
27761--27971
33
6.6
33
74
17
180
51
5
17
25
1.67
27690--27936
89
2.8
90
83
8
335
51
5
16
26
1.66
27761--28013
123
2.1
122
86
5
359
50
5
17
25
1.67
28035--28104
35
2.0
35
91
0
113
54
0
14
31
1.40
27761--28051
123
2.4
122
82
8
304
51
5
18
25
1.66
28177--28469
35
8.6
34
79
10
248
51
2
16
29
1.57
28220--28501
35
8.3
35
80
11
284
52
3
15
28
1.59
28233--28469
104
2.3
103
86
5
320
51
2
16
29
1.57
28201--28466
68
3.9
68
85
5
333
52
2
16
28
1.56
28219--28501
68
4.1
68
84
6
317
51
3
15
28
1.59
28461--28530
31
2.2
31
84
2
86
52
5
15
25
1.65
30785--30897
60
1.9
60
85
7
158
20
8
40
30
1.83
31470--31500
2
15.5
2
100
0
62
0
0
48
51
1.00
38958--38983
13
2.0
13
100
0
52
53
7
7
30
1.57
43454--43487
13
2.6
13
100
0
68
20
14
35
29
1.93
49939--49972
17
2.0
17
100
0
68
23
23
0
52
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50824--50854
2
15.5
2
100
0
62
51
0
48
0
1.00
53019--53063
5
8.6
5
85
4
54
71
0
0
28
0.87
53013--53053
22
1.9
21
95
5
73
63
0
0
36
0.95
53018--53066
22
2.2
22
88
0
71
69
0
0
30
0.89
67002--67078
35
2.1
38
85
7
106
22
3
11
62
1.45

Tables:   1

The End!