Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014322.1 Corchorus olitorius cultivar O-4 contig14355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16748
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:9242 original size:25 final size:23

Alignment explanation


    Indices: 9208--9268  Score: 61
    Period size: 25  Copynumber: 2.5  Consensus size: 23

       9198 AAAAAAATTG

                 *                    
       9208 TAAAAATATAGGTAATT-TTGAGAAA
          1 TAAAATTATAGG-AATTATT-A-AAA

                                    
       9233 TAAAATTATATGGAATTATTAAAA
          1 TAAAATTATA-GGAATTATTAAAA

                        
       9257 TAAAATTCATAG
          1 TAAAATT-ATAG

       9269 AAAGTTATAT


Statistics
Matches: 32,  Mismatches: 1, Indels: 7
        0.80            0.03        0.17

Matches are distributed among these distances:
  24   11  0.34
  25   17  0.53
  26    4  0.12

ACGTcount: A:0.52, C:0.02, G:0.11, T:0.34


Consensus pattern (23 bp):   
TAAAATTATAGGAATTATTAAAA
Done.