Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014327.1 Corchorus olitorius cultivar O-4 contig14360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46012

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
824--1069
122
2.0
126
90
6
392
50
2
11
36
1.50
1155--1201
11
4.3
11
88
0
76
48
0
12
38
1.41
1619--1652
18
1.9
17
88
5
50
76
0
17
5
0.98
2581--2608
2
14.0
2
100
0
56
0
50
0
50
1.00
9290--9323
16
2.1
16
100
0
68
29
23
0
47
1.52
9402--9490
43
2.1
43
93
0
151
34
17
10
37
1.84
10358--10394
7
5.4
7
96
3
67
89
0
10
0
0.49
11857--11903
26
1.9
24
87
12
69
27
27
4
40
1.75
12358--12398
21
2.0
21
85
9
57
36
9
24
29
1.87
30958--30989
11
2.6
13
90
9
50
15
15
34
34
1.90
31099--31149
17
3.1
16
86
8
66
21
21
21
35
1.96
36478--36760
29
9.8
29
81
0
314
20
19
22
37
1.94
36478--36760
87
3.3
87
84
0
368
20
19
22
37
1.94
40698--40722
13
1.9
13
100
0
50
32
12
16
40
1.84
45770--46012
29
8.4
29
90
0
362
19
18
24
37
1.94

Tables:   1

The End!