Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014328.1 Corchorus olitorius cultivar O-4 contig14361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9258
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:1797 original size:6 final size:6

Alignment explanation


    Indices: 1788--1822  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       1778 TCAGCTTCTT

                                      *      *      
       1788 CTGTGG CTGTGG CTGTGG CTGTGT CTGTGT CTGTG
          1 CTGTGG CTGTGG CTGTGG CTGTGG CTGTGG CTGTG

       1823 TGTTTTTATA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.00, C:0.17, G:0.43, T:0.40


Consensus pattern (6 bp):   
CTGTGG

Found at i:3861 original size:61 final size:61

Alignment explanation


    Indices: 3766--3885  Score: 231
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       3756 GTGGGAATGA

                                                                         
       3766 CATTCCCACCTAAAAGGATGGGAAAGTTAACTTTCCGAGAAAAGTGTTACAATTTTTACGT
          1 CATTCCCACCTAAAAGGATGGGAAAGTTAACTTTCCGAGAAAAGTGTTACAATTTTTACGT

                             *                                         
       3827 CATTCCCACCTAAAAGGGTGGGAAAGTTAACTTTCCGAGAAAAGTGTTACAATTTTTAC
          1 CATTCCCACCTAAAAGGATGGGAAAGTTAACTTTCCGAGAAAAGTGTTACAATTTTTAC

       3886 CTTTGTCTTT


Statistics
Matches: 58,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  61   58  1.00

ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29


Consensus pattern (61 bp):   
CATTCCCACCTAAAAGGATGGGAAAGTTAACTTTCCGAGAAAAGTGTTACAATTTTTACGT
Done.