Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014332.1 Corchorus olitorius cultivar O-4 contig14365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86000
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:5947 original size:196 final size:196
Alignment explanation
Indices: 5613--6003 Score: 773
Period size: 196 Copynumber: 2.0 Consensus size: 196
5603 ACCAAGGAGG
5613 CAGCAATTTCTTCAATCTGCTTGCACTTCTCTATAGCAGCTTGCTCCCTGTTAGTCTTCAGAGTA
1 CAGCAATTTCTTCAATCTGCTTGCACTTCTCTATAGCAGCTTGCTCCCTGTTAGTCTTCAGAGTA
5678 ATGAGTTCACCCTCCACTTTAGACATCTGAGCTTTGAGACTATCCAGAAGTGAGTTGAGAAGTAC
66 ATGAGTTCACCCTCCACTTTAGACATCTGAGCTTTGAGACTATCCAGAAGTGAGTTGAGAAGTAC
5743 TTCATGGTCAGTAGGATTGGTCATCTCATGAAACTTCATAATCTCAAGTTCCAACTCTCCTCTGC
131 TTCATGGTCAGTAGGATTGGTCATCTCATGAAACTTCATAATCTCAAGTTCCAACTCTCCTCTGC
5808 T
196 T
5809 CAGCAATTTCTTCAATCTGCTTGCACTTCTCTATAGCAGCTTGCTCCCTGTTAGTCTTCAGAGTA
1 CAGCAATTTCTTCAATCTGCTTGCACTTCTCTATAGCAGCTTGCTCCCTGTTAGTCTTCAGAGTA
*
5874 ATGAGTTCACCCTCCACTTTAGACATCTGAGCTTTGAGACTATTCAGAAGTGAGTTGAGAAGTAC
66 ATGAGTTCACCCTCCACTTTAGACATCTGAGCTTTGAGACTATCCAGAAGTGAGTTGAGAAGTAC
5939 TTCATGGTCAGTAGGATTGGTCATCTCATGAAACTTCATAATCTCAAGTTCCAACTCTCCTCTGC
131 TTCATGGTCAGTAGGATTGGTCATCTCATGAAACTTCATAATCTCAAGTTCCAACTCTCCTCTGC
6004 CAGTCAGGTA
Statistics
Matches: 194, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 194 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (196 bp):
CAGCAATTTCTTCAATCTGCTTGCACTTCTCTATAGCAGCTTGCTCCCTGTTAGTCTTCAGAGTA
ATGAGTTCACCCTCCACTTTAGACATCTGAGCTTTGAGACTATCCAGAAGTGAGTTGAGAAGTAC
TTCATGGTCAGTAGGATTGGTCATCTCATGAAACTTCATAATCTCAAGTTCCAACTCTCCTCTGC
T
Found at i:8516 original size:36 final size:36
Alignment explanation
Indices: 8464--8533 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
8454 AACGCCTTCT
* *
8464 GCTGAGAAAACGTCTTCTGCTGGCAGTCATGCATGC
1 GCTGAGAAAACATCTTCTGCTAGCAGTCATGCATGC
8500 GCTGAGAAAACATCTTCTGCTAGCAGTCATGCAT
1 GCTGAGAAAACATCTTCTGCTAGCAGTCATGCAT
8534 TTGCCGAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (36 bp):
GCTGAGAAAACATCTTCTGCTAGCAGTCATGCATGC
Found at i:8543 original size:36 final size:36
Alignment explanation
Indices: 8467--8543 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
8457 GCCTTCTGCT
* * *
8467 GAGAAAACGTCTTCTGCTGGCAGTCATGCATGCGCT
1 GAGAAAACATCTTCTGCTAGCAGTCATGCATGCGCC
**
8503 GAGAAAACATCTTCTGCTAGCAGTCATGCATTTGCC
1 GAGAAAACATCTTCTGCTAGCAGTCATGCATGCGCC
8539 GAGAA
1 GAGAA
8544 CATGTCTTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (36 bp):
GAGAAAACATCTTCTGCTAGCAGTCATGCATGCGCC
Found at i:16517 original size:124 final size:124
Alignment explanation
Indices: 16340--16700 Score: 460
Period size: 124 Copynumber: 2.9 Consensus size: 124
16330 TGTACCACAG
* * * * * *
16340 TAGCCACGCTACTGACCTTCTTTGTTGATAAAGAACAGGACTTTGGTTG-AAGTGCCCAACAGCA
1 TAGCCATGCTGCTGACCTCCTTTGTTGATGAAGAATAAGACTTTGG-TGAAAGTGCCCAACAGCA
* * *
16404 CTTCTCGACAGCGGAACCTCCTCCTCGACAGAGTGACACGTCAGCAAGGTTGCACCAGGT
65 CTTCTCGACAGCGGAACCTCCTCCTCGGCAGAGTGACACGTCAGCAAGGTTGCAACAAGT
* * * *
16464 TAGCCATGCTGCTGACCTCCTTTGTTGATGAAGGATAAGACTTTGGTGAAAGTGCCTAGCAACAC
1 TAGCCATGCTGCTGACCTCCTTTGTTGATGAAGAATAAGACTTTGGTGAAAGTGCCCAACAGCAC
* ** * *
16529 TTTTC-AGTGGCGGAACCTCCTCCTTGGCAGAGTGACATGTCAGCAAGGTTGCAACAAGT
66 TTCTCGA-CAGCGGAACCTCCTCCTCGGCAGAGTGACACGTCAGCAAGGTTGCAACAAGT
* **
16588 TAGCCATGTTGCTGACCTCCTTTGTTGATGAATTATAAGACTTTGGTGAAAGTG-CCAAGCAGCA
1 TAGCCATGCTGCTGACCTCCTTTGTTGATGAAGAATAAGACTTTGGTGAAAGTGCCCAA-CAGCA
*
16652 CTATCTAG-CAGCGGAACCTCCTCCTCGGCAGAGTGACACGTCAGCAAGG
65 CT-TCTCGACAGCGGAACCTCCTCCTCGGCAGAGTGACACGTCAGCAAGG
16701 CAGTCCCACA
Statistics
Matches: 202, Mismatches: 30, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
123 5 0.02
124 195 0.97
125 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (124 bp):
TAGCCATGCTGCTGACCTCCTTTGTTGATGAAGAATAAGACTTTGGTGAAAGTGCCCAACAGCAC
TTCTCGACAGCGGAACCTCCTCCTCGGCAGAGTGACACGTCAGCAAGGTTGCAACAAGT
Found at i:19032 original size:322 final size:325
Alignment explanation
Indices: 18619--19266 Score: 1131
Period size: 322 Copynumber: 2.0 Consensus size: 325
18609 ATAAAAACAA
18619 GGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCTTGATGATGGTA
1 GGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCTTGATGATGGTA
18684 AACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGG-TTTCTCAATCACCAATGCCTT
66 AACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATCACCAATGCCTT
*
18748 GCCACATAGTGGGCTTTTGTAAATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCA-CGACC
131 GCCACATAGTGGGCTTTTGTAAATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGACA
* *
18812 GCATAATGCCTTGCCATG-CCTTGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTG
196 GCATAATGCCTTGCCATGTCCTTGATGATAGTAAACAATGCACCATACAAGGAAGACTAGGTGTG
*
18876 AGCTATAGTGGTTTTCTCAATCACCAATGCCTTGCCACATAGTGGGCTTTTGTAAATAAAGATAC
261 AGCTATAGTGGTTTTCTCAATCACCAATGCCTTGCCACATAGTGAGCTTTTGTAAATAAAGATAC
* *
18941 GGTGAGAACTATAGGTTGTCTCAATTACCGGCGGCATAATGCCTTGTCATGCCTTGATGATGGTA
1 GGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCTTGATGATGGTA
* *
19006 AACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATCACTAATGTCTT
66 AACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATCACCAATGCCTT
* *
19071 GCCACATAGTGGGCTTTTGTAAATAAAGACACGGTGAGAATTATAGGTTGTCTCAATCACCGGCA
131 GCCACATAGTGGGCTTTTGTAAATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGACA
* *
19136 GCATAATGCCTTGCCTTGCCTTTCCTTGATGATAGTAAATAATGCACCATACAAGGAAGACTAGG
196 GCATAATGCCTTGCCATG----TCCTTGATGATAGTAAACAATGCACCATACAAGGAAGACTAGG
19201 TGTGAGCTATAGTGGTTTTCTCAATCACCAATGCCTTGCCACATAGTGAGCTTTTGTAAATAAAG
257 TGTGAGCTATAGTGGTTTTCTCAATCACCAATGCCTTGCCACATAGTGAGCTTTTGTAAATAAAG
19266 A
322 A
19267 CACTTTTTGG
Statistics
Matches: 307, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
322 106 0.35
323 77 0.25
324 20 0.07
329 104 0.34
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (325 bp):
GGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCTTGATGATGGTA
AACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATCACCAATGCCTT
GCCACATAGTGGGCTTTTGTAAATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGACA
GCATAATGCCTTGCCATGTCCTTGATGATAGTAAACAATGCACCATACAAGGAAGACTAGGTGTG
AGCTATAGTGGTTTTCTCAATCACCAATGCCTTGCCACATAGTGAGCTTTTGTAAATAAAGATAC
Found at i:19051 original size:162 final size:162
Alignment explanation
Indices: 18608--19269 Score: 1121
Period size: 162 Copynumber: 4.1 Consensus size: 162
18598 GTATCATAAT
* *
18608 AATAAAAACAAGGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCT
1 AATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCT
18673 TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGG-TTTCTCAATC
66 TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATC
18737 ACCAATGCCTTGCCACATAGTGGGCTTTTGTA
131 ACCAATGCCTTGCCACATAGTGGGCTTTTGTA
* *
18769 AATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCA-CGACCGCATAATGCCTTGCCATGCCT
1 AATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCT
18833 TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATC
66 TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATC
18898 ACCAATGCCTTGCCACATAGTGGGCTTTTGTA
131 ACCAATGCCTTGCCACATAGTGGGCTTTTGTA
* * *
18930 AATAAAGATACGGTGAGAACTATAGGTTGTCTCAATTACCGGCGGCATAATGCCTTGTCATGCCT
1 AATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCT
18995 TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATC
66 TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATC
* *
19060 ACTAATGTCTTGCCACATAGTGGGCTTTTGTA
131 ACCAATGCCTTGCCACATAGTGGGCTTTTGTA
* * *
19092 AATAAAGACACGGTGAGAATTATAGGTTGTCTCAATCACCGGCAGCATAATGCCTTGCCTTGCCT
1 AATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATG---
* * *
19157 TTCCTTGATGATAGTAAATAATGCACCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCT
63 --CCTTGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCT
*
19222 CAATCACCAATGCCTTGCCACATAGTGAGCTTTTGTA
126 CAATCACCAATGCCTTGCCACATAGTGGGCTTTTGTA
19259 AATAAAGACAC
1 AATAAAGACAC
19270 TTTTTGGAGG
Statistics
Matches: 471, Mismatches: 23, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
160 78 0.17
161 114 0.24
162 174 0.37
167 105 0.22
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (162 bp):
AATAAAGACACGGTGAGAACTATAGGTTGTCTCAATCACCGGCGGCATAATGCCTTGCCATGCCT
TGATGATGGTAAACAATGCATCATACAAGGAAGACTAGGTGTGAGCTATAGTGGTTTTCTCAATC
ACCAATGCCTTGCCACATAGTGGGCTTTTGTA
Found at i:21684 original size:18 final size:18
Alignment explanation
Indices: 21661--21713 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
21651 AAAAAAACGG
*
21661 AGAGCACACGATGCCATT
1 AGAGCACACGATGCCATA
*
21679 AGAGCACACGATGCCACA
1 AGAGCACACGATGCCATA
*
21697 AGAGCACATGATGCCAT
1 AGAGCACACGATGCCAT
21714 GCTTTGGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.13
Consensus pattern (18 bp):
AGAGCACACGATGCCATA
Found at i:27925 original size:27 final size:27
Alignment explanation
Indices: 27849--27927 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
27839 GGTGCACTTG
* * *
27849 AAATAACCAAAATGCCCCTGGACGTGT
1 AAATGACCAAAATGCCCCTGGAGGTGC
*
27876 AAATGACCGAAATGCCCCTGGAGGTGC
1 AAATGACCAAAATGCCCCTGGAGGTGC
27903 AAATGACCAAAATGCCCCTGGAGGT
1 AAATGACCAAAATGCCCCTGGAGGT
27928 CCCCAATGCT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.16
Consensus pattern (27 bp):
AAATGACCAAAATGCCCCTGGAGGTGC
Found at i:30349 original size:53 final size:53
Alignment explanation
Indices: 30286--30393 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
30276 CTTTTCTCAC
30286 GATTCATATTATAATTACGTATTGAAATCTGATGCTCACCGTCATTAGGGATT
1 GATTCATATTATAATTACGTATTGAAATCTGATGCTCACCGTCATTAGGGATT
30339 GATTCATATTATAATTACGTATTGAAATCTGATGCTCACCGTCATTAGGGATT
1 GATTCATATTATAATTACGTATTGAAATCTGATGCTCACCGTCATTAGGGATT
30392 GA
1 GA
30394 AATCTGATGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.37
Consensus pattern (53 bp):
GATTCATATTATAATTACGTATTGAAATCTGATGCTCACCGTCATTAGGGATT
Found at i:30395 original size:30 final size:30
Alignment explanation
Indices: 30359--30422 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
30349 ATAATTACGT
*
30359 ATTGAAATCTGATGCTCACCGTCATTAGGG
1 ATTGAAATCTGATGCTCACCGCCATTAGGG
30389 ATTGAAATCTGATGCTCACCGCCATTAGGG
1 ATTGAAATCTGATGCTCACCGCCATTAGGG
30419 ATTG
1 ATTG
30423 GTACTATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (30 bp):
ATTGAAATCTGATGCTCACCGCCATTAGGG
Found at i:37664 original size:31 final size:31
Alignment explanation
Indices: 37629--37690 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37619 AATTCAATCC
37629 AAACTAGAAACTATACCATAAATAAACAAAT
1 AAACTAGAAACTATACCATAAATAAACAAAT
37660 AAACTAGAAACTATACCATAAATAAACAAAT
1 AAACTAGAAACTATACCATAAATAAACAAAT
37691 TACAAACAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.61, C:0.16, G:0.03, T:0.19
Consensus pattern (31 bp):
AAACTAGAAACTATACCATAAATAAACAAAT
Found at i:37697 original size:27 final size:28
Alignment explanation
Indices: 37636--37697 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 28
37626 TCCAAACTAG
*
37636 AAACTATACCATAAATAAACAAATAAACTAG
1 AAACTATACCATAAATAAACAAAT--A-TAC
37667 AAACTATACCATAAATAAACAAAT-TAC
1 AAACTATACCATAAATAAACAAATATAC
37694 AAAC
1 AAAC
37698 AAACTCACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 6 0.20
31 24 0.80
ACGTcount: A:0.61, C:0.18, G:0.02, T:0.19
Consensus pattern (28 bp):
AAACTATACCATAAATAAACAAATATAC
Found at i:37858 original size:14 final size:14
Alignment explanation
Indices: 37839--37870 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
37829 TACTCCTATA
*
37839 TTATTTTTATTTAT
1 TTATTTATATTTAT
37853 TTATTTATATTTAT
1 TTATTTATATTTAT
37867 TTAT
1 TTAT
37871 AAAATAACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (14 bp):
TTATTTATATTTAT
Found at i:44094 original size:1 final size:1
Alignment explanation
Indices: 44088--44121 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
44078 GCTTCTGTTG
44088 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
44122 AATCTTGTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:50900 original size:28 final size:27
Alignment explanation
Indices: 50858--50912 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
50848 ACTGAGACTA
*
50858 GACTCGAAACTGACTCGAAAAAACAAACT
1 GACTCGAAACCGACTC--AAAAACAAACT
50887 GACTC-AAACCGACTCAAAAACAAACT
1 GACTCGAAACCGACTCAAAAACAAACT
50913 CAAATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 11 0.44
28 9 0.36
29 5 0.20
ACGTcount: A:0.49, C:0.27, G:0.11, T:0.13
Consensus pattern (27 bp):
GACTCGAAACCGACTCAAAAACAAACT
Found at i:53035 original size:22 final size:22
Alignment explanation
Indices: 53005--53240 Score: 140
Period size: 22 Copynumber: 10.5 Consensus size: 22
52995 TCCAACATAG
*
53005 AAATATTGATAACCACACCATGA
1 AAAT-TTGATAACCACACTATGA
** * *
53028 AAATTTGATAACCTTATTGTG-
1 AAATTTGATAACCACACTATGA
* *
53049 AAATTTCGATAACCTCCCTATGA
1 AAATTT-GATAACCACACTATGA
* *
53072 AAATTTGATAACCACAATGTGA
1 AAATTTGATAACCACACTATGA
* * *
53094 AATTTTGATAAGCACACTGTG-
1 AAATTTGATAACCACACTATGA
*
53115 AAATTCTGATAACCACACAATGA
1 AAATT-TGATAACCACACTATGA
** * *
53138 AGTTTTGATAACCTCGTTGTCTATGA
1 AAATTTGATAACCAC----ACTATGA
* * *
53164 AATTTTGATAATCACATTAT-A
1 AAATTTGATAACCACACTATGA
* * *
53185 AAA-TTGGTAATCGCACTATGA
1 AAATTTGATAACCACACTATGA
*
53206 AAATTTTGATAACCACACCATG-
1 AAA-TTTGATAACCACACTATGA
53228 AAATTTCGATAAC
1 AAATTT-GATAAC
53241 TTCCCTATAA
Statistics
Matches: 163, Mismatches: 38, Indels: 25
0.72 0.17 0.11
Matches are distributed among these distances:
20 13 0.08
21 20 0.12
22 87 0.53
23 26 0.16
26 17 0.10
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (22 bp):
AAATTTGATAACCACACTATGA
Found at i:53327 original size:22 final size:22
Alignment explanation
Indices: 53004--53355 Score: 115
Period size: 22 Copynumber: 15.6 Consensus size: 22
52994 CTCCAACATA
* *
53004 GAAATATTGATAACCACACC-AT
1 GAAATTTTGATAACCTC-CCTAT
* *** *
53026 GAAAATTTGATAACCTTATTGT
1 GAAATTTTGATAACCTCCCTAT
*
53048 GAAATTTCGATAACCTCCCTAT
1 GAAATTTTGATAACCTCCCTAT
* * ** *
53070 GAAAATTTGATAACCACAATGT
1 GAAATTTTGATAACCTCCCTAT
* * * *
53092 GAAATTTTGATAAGCACACTGT
1 GAAATTTTGATAACCTCCCTAT
* * * *
53114 GAAATTCTGATAACCACACAAT
1 GAAATTTTGATAACCTCCCTAT
* *
53136 GAAGTTTTGATAACCTCGTTGTCTAT
1 GAAATTTTGATAACCTC----CCTAT
* * **
53162 GAAATTTTGATAATCACATTAT
1 GAAATTTTGATAACCTCCCTAT
* * * * *
53184 -AAA-ATTGGTAATCGCACTAT
1 GAAATTTTGATAACCTCCCTAT
*
53204 GAAAATTTTGATAACCACACC-AT
1 G-AAATTTTGATAACCTC-CCTAT
* *
53227 GAAATTTCGATAACTTCCCTATAAGAAT
1 GAAATTTTGATAACCTCCC--T----AT
* ** **
53255 GAAATTGTGATATTCTCTATAT
1 GAAATTTTGATAACCTCCCTAT
*
53277 GTAATTTTGATAACCTCTCC-AT
1 GAAATTTTGATAACCTC-CCTAT
*
53299 -AATATTTTCATAACCTCCCTAT
1 GAA-ATTTTGATAACCTCCCTAT
* *
53321 GAAATTTTGTTAACCAT-CCTAG
1 GAAATTTTGATAACC-TCCCTAT
53343 GAAATTTTGATAA
1 GAAATTTTGATAA
53356 AAATTTTTTT
Statistics
Matches: 242, Mismatches: 67, Indels: 42
0.69 0.19 0.12
Matches are distributed among these distances:
20 13 0.05
21 8 0.03
22 174 0.72
23 14 0.06
24 1 0.00
26 18 0.07
28 14 0.06
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (22 bp):
GAAATTTTGATAACCTCCCTAT
Found at i:53541 original size:22 final size:22
Alignment explanation
Indices: 53516--53615 Score: 87
Period size: 22 Copynumber: 4.5 Consensus size: 22
53506 GTAACATCTG
*
53516 TATGAAATTTTGATAATTACAC
1 TATGAAATTTTGATAACTACAC
* * *
53538 TATGAAGTTCTGATAACCTCCA-
1 TATGAAATTTTGATAA-CTACAC
* *
53560 TATGAAATTTTGGTAACCACAC
1 TATGAAATTTTGATAACTACAC
* *
53582 TATGAAATTTTAATAACCTTC-C
1 TATGAAATTTTGATAA-CTACAC
*
53604 TATGTAATTTTG
1 TATGAAATTTTG
53616 GTTTGATTGT
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
21 3 0.05
22 52 0.87
23 5 0.08
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAACTACAC
Found at i:53616 original size:44 final size:44
Alignment explanation
Indices: 53516--53617 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
53506 GTAACATCTG
* ** * *
53516 TATGAAATTTTGATAATTACACTATGAAGTTCTGATAACCTCCA
1 TATGAAATTTTGGTAACCACACTATGAAATTCTAATAACCTCCA
*
53560 TATGAAATTTTGGTAACCACACTATGAAATTTTAATAACCTTCC-
1 TATGAAATTTTGGTAACCACACTATGAAATTCTAATAACC-TCCA
*
53604 TATGTAATTTTGGT
1 TATGAAATTTTGGT
53618 TTGATTGTCA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 47 0.94
45 3 0.06
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (44 bp):
TATGAAATTTTGGTAACCACACTATGAAATTCTAATAACCTCCA
Found at i:55210 original size:170 final size:172
Alignment explanation
Indices: 54901--55215 Score: 383
Period size: 170 Copynumber: 1.8 Consensus size: 172
54891 ATTTGGCAAG
* * *
54901 CCACTTTCCAATGAGGTCTATTGACTTTGAAACATGACATATGAGCGATGGTTACACAAATAATG
1 CCACTTTCCAATGAGCTCTATTGACTCTGAAACATAACATATGAGCGATGGTTACACAAATAATG
* * * *
54966 CATTCGGAATTAACATTTTCTCAAGAACAACGTTCTGCGCACAAACACGCAAAATCGTGAAGTTT
66 CATTCGGAATGAACATTTTCTCAAGAACAACGTTCTGCGCACAAACACGCAAAATAGGGAAGTTG
55031 AAGTTTTAGG-TTTTGAAGAAAGTTTTTTTTTTTTGACAAAC
131 AAGTTTTAGGCTTTTGAAGAAAGTTTTTTTTTTTTGACAAAC
* * *
55072 CCACTTTCCAATTAGCT-TACTT-ACTCTGAAACATAACATTTGAGC-ATTGGTTTCACAAATAA
1 CCACTTTCCAATGAGCTCTA-TTGACTCTGAAACATAACATATGAGCGA-TGGTTACACAAATAA
* * * ** *
55134 TGTACTT-GGAATGAGCATTTTC-CTAAGAACAACGTT-TGGCGCTCAAACGTGCTAAATAGGGA
64 TGCA-TTCGGAATGAACATTTTCTC-AAGAACAACGTTCT-GCGCACAAACACGCAAAATAGGGA
*
55196 AGTTGAGGTTTTAGGCTTTT
126 AGTTGAAGTTTTAGGCTTTT
55216 TAGAAAGCTT
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
169 3 0.02
170 95 0.79
171 23 0.19
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (172 bp):
CCACTTTCCAATGAGCTCTATTGACTCTGAAACATAACATATGAGCGATGGTTACACAAATAATG
CATTCGGAATGAACATTTTCTCAAGAACAACGTTCTGCGCACAAACACGCAAAATAGGGAAGTTG
AAGTTTTAGGCTTTTGAAGAAAGTTTTTTTTTTTTGACAAAC
Found at i:55359 original size:22 final size:22
Alignment explanation
Indices: 55334--55375 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
55324 TCATGCTCCA
55334 ATTTAG-AAATATTGATAACCAC
1 ATTTAGCAAAT-TTGATAACCAC
*
55356 ATTTTGCAAATTTGATAACC
1 ATTTAGCAAATTTGATAACC
55376 TTATATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (22 bp):
ATTTAGCAAATTTGATAACCAC
Found at i:55406 original size:22 final size:21
Alignment explanation
Indices: 55339--55679 Score: 116
Period size: 22 Copynumber: 15.3 Consensus size: 21
55329 CTCCAATTTA
* * *
55339 GAAATATTGATAACCACATTTT
1 GAAAT-TTGATAACCTCACTAT
*
55361 GCAAATTTGATAACCTTA-TAT
1 G-AAATTTGATAACCTCACTAT
* *
55382 GAAATTTCGATAATCTCCCTAT
1 GAAATTT-GATAACCTCACTAT
* *
55404 GAAAATTTGATAACCACACTGT
1 G-AAATTTGATAACCTCACTAT
* * *
55426 AAAATTTGGGTAACCACACTAT
1 GAAATTT-GATAACCTCACTAT
* *
55448 GAAATTTCGATAACCTCAGTGT
1 GAAATTT-GATAACCTCACTAT
*
55470 GAAATTTGATAATCTGC-CTAT
1 GAAATTTGATAACCT-CACTAT
* * * * *
55491 AAAATTTTAATAATCACAATAAAT
1 GAAA-TTTGATAACCTCACT--AT
* * *
55515 -AAAATTGGTAACCGCACTAT
1 GAAATTTGATAACCTCACTAT
*
55535 GAAAATTTTGATAACCACA-TCAT
1 G-AAA-TTTGATAACCTCACT-AT
55558 GAAATTTCGATAACCTC-CTAT
1 GAAATTT-GATAACCTCACTAT
* *
55579 GAGAATGAAACTGTGATATCCTCTCTAT
1 GA-AAT-----T-TGATAACCTCACTAT
* * *
55607 GCAATTTCGATAACCTCTCCAT
1 GAAATTT-GATAACCTCACTAT
* * *
55629 AAAATTTTCATAACCTCCCTAT
1 GAAA-TTTGATAACCTCACTAT
* * * *
55651 AAAATTTTGTTAACCTCTCTAG
1 GAAA-TTTGATAACCTCACTAT
55673 GAAATTT
1 GAAATTT
55680 TGATCAGCAA
Statistics
Matches: 243, Mismatches: 50, Indels: 53
0.70 0.14 0.15
Matches are distributed among these distances:
20 8 0.03
21 40 0.16
22 146 0.60
23 29 0.12
24 2 0.01
27 12 0.05
28 6 0.02
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (21 bp):
GAAATTTGATAACCTCACTAT
Found at i:55525 original size:87 final size:85
Alignment explanation
Indices: 55344--55580 Score: 239
Period size: 87 Copynumber: 2.7 Consensus size: 85
55334 ATTTAGAAAT
* * * * *
55344 ATTGATAACCACATTTTGCAAATTTGATAACCTTATATGAAATTTCGATAATCTCCCTATGAAAA
1 ATTGGTAACCACACTATGAAAATTTGATAACCTCATATGAAATTTCGATAATCTCCCTATGAAAA
* * *
55409 TTTGATAACCACACTGTAAA
66 TTTAATAACCACAATATAAA
* *
55429 ATTTGGGTAACCACACTATG-AAATTTCGATAACCTCAGTGTGAAATTT-GATAATCTGCCTAT-
1 A-TT-GGTAACCACACTATGAAAATTT-GATAACCTCA-TATGAAATTTCGATAATCTCCCTATG
*
55491 AAAATTTTAATAATCACAATAAATAAA
62 AAAA-TTTAATAACCACAAT--ATAAA
* * *
55518 ATTGGTAACCGCACTATGAAAATTTTGATAACCACATCATGAAATTTCGATAACCT-CCTATGA
1 ATTGGTAACCACACTATGAAAA-TTTGATAACCTCAT-ATGAAATTTCGATAATCTCCCTATGA
55581 GAATGAAACT
Statistics
Matches: 126, Mismatches: 14, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
85 1 0.01
86 12 0.10
87 61 0.48
88 36 0.29
89 16 0.13
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (85 bp):
ATTGGTAACCACACTATGAAAATTTGATAACCTCATATGAAATTTCGATAATCTCCCTATGAAAA
TTTAATAACCACAATATAAA
Found at i:55680 original size:22 final size:22
Alignment explanation
Indices: 55366--55833 Score: 104
Period size: 22 Copynumber: 21.2 Consensus size: 22
55356 ATTTTGCAAA
* *
55366 TTTGATAACCT-TATATGAAAT
1 TTTGATAACCTCTCTATAAAAT
* * *
55387 TTCGATAATCTCCCTATGAAAA-
1 TTTGATAACCTCTCTAT-AAAAT
* * *
55409 TTTGATAACCACACTGTAAAAT
1 TTTGATAACCTCTCTATAAAAT
* * * * *
55431 TTGGGTAACCACACTATGAAAT
1 TTTGATAACCTCTCTATAAAAT
* ** * *
55453 TTCGATAACCTCAGTGTGAAA-
1 TTTGATAACCTCTCTATAAAAT
*
55474 TTTGATAATCTGC-CTATAAAAT
1 TTTGATAACCT-CTCTATAAAAT
* * * *
55496 TTTAATAA--TCACAATAAATAAA
1 TTTGATAACCTCTCTAT-AA-AAT
* * * *
55518 ATTGGTAACCGCACTATGAAAAT
1 TTTGATAACCTCTCTAT-AAAAT
* *
55541 TTTGATAACCACATC-ATGAAAT
1 TTTGATAACCTC-TCTATAAAAT
* *
55563 TTCGATAACCTC-CTATGAGAATGAAAC
1 TTTGATAACCTCTCTAT----A--AAAT
* * **
55590 TGTGATATCCTCTCTATGCAAT
1 TTTGATAACCTCTCTATAAAAT
* *
55612 TTCGATAACCTCTCCATAAAAT
1 TTTGATAACCTCTCTATAAAAT
* *
55634 TTTCATAACCTCCCTATAAAAT
1 TTTGATAACCTCTCTATAAAAT
* **
55656 TTTGTTAACCTCTCTAGGAAAT
1 TTTGATAACCTCTCTATAAAAT
**
55678 TTTGAT---C-AGC-A-AAAAT
1 TTTGATAACCTCTCTATAAAAT
*
55694 TTTCG-TAACCTCCCTCCCTATGAAAT
1 TTT-GATAACCT--CT--CTATAAAAT
* * *
55720 TTTGGTAACCTCTGTATGAAAT
1 TTTGATAACCTCTCTATAAAAT
* * *
55742 TTTGATAA-CTACACTATGAAGT
1 TTTGATAACCT-CTCTATAAAAT
* *
55764 TTTGATAACCTCTATATGAAAT
1 TTTGATAACCTCTCTATAAAAT
* * * **
55786 TTTGGTAACCACACTACGAAAT
1 TTTGATAACCTCTCTATAAAAT
* * **
55808 TTTGATAATCTTTCTATGTAAT
1 TTTGATAACCTCTCTATAAAAT
55830 TTTG
1 TTTG
55834 GTTTGATTGT
Statistics
Matches: 323, Mismatches: 91, Indels: 65
0.67 0.19 0.14
Matches are distributed among these distances:
16 8 0.02
17 2 0.01
18 1 0.00
19 3 0.01
20 5 0.02
21 33 0.10
22 211 0.65
23 18 0.06
24 11 0.03
25 2 0.01
26 13 0.04
27 12 0.04
28 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.35
Consensus pattern (22 bp):
TTTGATAACCTCTCTATAAAAT
Found at i:55767 original size:44 final size:44
Alignment explanation
Indices: 55339--55833 Score: 169
Period size: 44 Copynumber: 11.2 Consensus size: 44
55329 CTCCAATTTA
* * *
55339 GAAATATTGATAACCACATTTTGCAAA-TTTGATAACCT-TATAT
1 GAAATTTTGATAACCACACTATG-AAATTTTGATAACCTCTATAT
* * * * * * *
55382 GAAATTTCGATAATCTCCCTATGAAAATTTGATAACCAC-ACTGT
1 GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTA-TAT
* * * * *
55426 AAAATTTGGGTAACCACACTATGAAATTTCGATAACCTC-AGTGT
1 GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTA-TAT
** * * ** *
55470 GAAA-TTTGATAATCTGC-CTATAAAATTTTAATAATCACAATAAAT
1 GAAATTTTGATAA-CCACACTATGAAATTTTGATAA-C-CTCTATAT
* * * *
55515 -AAA-ATTGGTAACCGCACTATGAAAATTTTGATAACCAC-ATCAT
1 GAAATTTTGATAACCACACTATG-AAATTTTGATAACCTCTAT-AT
* * * * *
55558 GAAATTTCGATAACCTC-CTATGAGAATGAAACTGTGATATCCTCTCTAT
1 GAAATTTTGATAACCACACTATGA-AAT-----TTTGATAACCTCTATAT
* * * * * * * **
55607 GCAATTTCGATAACCTCTCCATAAAATTTTCATAACCTCCCTAT
1 GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTATAT
* * * * * **
55651 AAAATTTTGTTAACCTCTCTAGGAAATTTTGAT--CAGC-A-A-
1 GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTATAT
* * * *
55690 -AAATTTTCG-TAACCTCCCTCCCTATGAAATTTTGGTAACCTCTGTAT
1 GAAATTTT-GATAA----CCACACTATGAAATTTTGATAACCTCTATAT
* *
55737 GAAATTTTGATAACTACACTATGAAGTTTTGATAACCTCTATAT
1 GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTATAT
* * * * *
55781 GAAATTTTGGTAACCACACTACGAAATTTTGATAATCTTTCTAT
1 GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTATAT
*
55825 GTAATTTTG
1 GAAATTTTG
55834 GTTTGATTGT
Statistics
Matches: 336, Mismatches: 84, Indels: 63
0.70 0.17 0.13
Matches are distributed among these distances:
38 10 0.03
39 1 0.00
40 1 0.00
42 23 0.07
43 55 0.16
44 177 0.53
45 21 0.06
46 2 0.01
47 1 0.00
48 10 0.03
49 30 0.09
50 5 0.01
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (44 bp):
GAAATTTTGATAACCACACTATGAAATTTTGATAACCTCTATAT
Found at i:56591 original size:6 final size:6
Alignment explanation
Indices: 56575--56628 Score: 72
Period size: 6 Copynumber: 8.7 Consensus size: 6
56565 AATTACGTAC
* *
56575 TTTTGT ATTTGT TTTTGA TTTTGT TTTTGT TTTTGTT TTTTGTT TTTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTG-T TTTTG-T TTTTGT
56625 TTTT
1 TTTT
56629 TATTTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
6 30 0.70
7 13 0.30
ACGTcount: A:0.04, C:0.00, G:0.15, T:0.81
Consensus pattern (6 bp):
TTTTGT
Found at i:56597 original size:12 final size:12
Alignment explanation
Indices: 56582--56639 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
56572 TACTTTTGTA
56582 TTTGTTTTTGAT
1 TTTGTTTTTGAT
*
56594 TTTGTTTTTGTT
1 TTTGTTTTTGAT
*
56606 TTTGTTTTTTGTTT
1 TTTG-TTTTTG-AT
*
56620 TTTGTTTTTTAT
1 TTTGTTTTTGAT
56632 TTT-TTTTT
1 TTTGTTTTT
56640 ACAAAAGCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
11 5 0.12
12 19 0.46
13 11 0.27
14 6 0.15
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.84
Consensus pattern (12 bp):
TTTGTTTTTGAT
Found at i:56608 original size:7 final size:7
Alignment explanation
Indices: 56593--56636 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
56583 TTGTTTTTGA
56593 TTTTG-T
1 TTTTGTT
56599 TTTTG-T
1 TTTTGTT
56605 TTTTGTT
1 TTTTGTT
56612 TTTTGTT
1 TTTTGTT
56619 TTTTGTT
1 TTTTGTT
*
56626 TTTTATT
1 TTTTGTT
56633 TTTT
1 TTTT
56637 TTTACAAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.86
Consensus pattern (7 bp):
TTTTGTT
Found at i:72088 original size:22 final size:22
Alignment explanation
Indices: 72062--72111 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
72052 ACTATAGTAT
* *
72062 CAAAAAATTATAGGGAGATTAA
1 CAAAAAATAACAGGGAGATTAA
** *
72084 CAAAATCTAACAGGGAGATTAT
1 CAAAAAATAACAGGGAGATTAA
72106 CAAAAA
1 CAAAAA
72112 TCATAGGAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (22 bp):
CAAAAAATAACAGGGAGATTAA
Found at i:85156 original size:19 final size:18
Alignment explanation
Indices: 85123--85158 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
85113 TTGAGATAAT
85123 TCTTCAATGATCTTCAAA
1 TCTTCAATGATCTTCAAA
*
85141 TCTTCAAATTATCTTCAA
1 TCTTC-AATGATCTTCAA
85159 TGAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (18 bp):
TCTTCAATGATCTTCAAA
Found at i:85166 original size:11 final size:10
Alignment explanation
Indices: 85123--85169 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
85113 TTGAGATAAT
85123 TCTTCAATGA
1 TCTTCAATGA
85133 TCTTCAA--A
1 TCTTCAATGA
*
85141 TCTTCAAATTA
1 TCTTC-AATGA
85152 TCTTCAATGA
1 TCTTCAATGA
85162 GTCTTCAA
1 -TCTTCAA
85170 ACACGAACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
8 6 0.19
9 2 0.06
10 11 0.34
11 13 0.41
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.40
Consensus pattern (10 bp):
TCTTCAATGA
Found at i:85517 original size:27 final size:27
Alignment explanation
Indices: 85487--85559 Score: 85
Period size: 26 Copynumber: 2.7 Consensus size: 27
85477 AGGGTCACCT
*
85487 AGGGGCATTTTGGTCATTTTTACACTA
1 AGGGGCATTTTGGTCATTTTCACACTA
* * * *
85514 A-GGGCATTTTGGTCATTTGCATATTT
1 AGGGGCATTTTGGTCATTTTCACACTA
*
85540 AGGGGCATGTTGGTCATTTT
1 AGGGGCATTTTGGTCATTTT
85560 AAGTCCACTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.42
Consensus pattern (27 bp):
AGGGGCATTTTGGTCATTTTCACACTA
Done.