Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014338.1 Corchorus olitorius cultivar O-4 contig14371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53726

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
849--880
4
7.8
4
96
3
55
25
0
21
53
1.46
11340--11387
17
2.8
17
87
0
60
33
18
22
25
1.97
26027--26065
19
2.1
19
100
0
78
38
10
15
35
1.81
27650--27791
69
2.1
69
94
0
248
28
11
18
42
1.84
27863--27914
27
1.9
28
84
7
72
26
1
28
42
1.66
32397--32423
8
3.4
8
100
0
54
0
11
0
88
0.50
38972--39008
14
2.8
14
80
12
51
0
54
0
45
1.00
40529--40622
47
2.0
47
97
0
179
28
14
24
31
1.95
44988--45024
19
1.9
19
88
0
56
24
0
16
59
1.37
46985--47013
14
2.1
14
100
0
58
51
6
0
41
1.28
52393--52426
13
2.6
13
95
0
59
58
2
0
38
1.13
52664--52704
2
20.5
2
89
0
64
46
2
2
48
1.28

Tables:   1

The End!