Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014344.1 Corchorus olitorius cultivar O-4 contig14377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44781

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2215--2280
27
2.4
27
95
5
116
40
27
19
12
1.87
2579--2723
50
2.9
50
98
0
281
24
29
12
33
1.92
12590--12637
11
4.7
11
78
21
52
39
6
20
33
1.78
13221--13246
11
2.4
11
100
0
52
7
15
7
69
1.35
14013--14054
16
2.7
15
88
7
57
11
9
9
69
1.38
15757--15800
20
2.2
20
95
0
79
22
36
13
27
1.92
18546--18611
27
2.4
27
92
0
114
40
25
16
16
1.89
19362--19390
2
14.5
2
100
0
58
48
0
0
51
1.00
27120--27172
22
2.4
22
75
6
54
60
11
9
18
1.57
28397--28432
19
1.9
18
88
5
54
27
22
8
41
1.82
34827--34851
12
2.1
12
100
0
50
36
16
16
32
1.90
36843--36874
11
2.8
12
86
13
50
37
6
18
37
1.76
36855--36890
18
1.9
18
88
5
54
38
2
22
36
1.69
39875--39903
11
2.6
11
100
0
58
48
0
34
17
1.47
41272--41316
21
2.1
21
91
0
72
22
44
24
8
1.81
43475--43508
11
3.1
11
87
12
52
38
5
17
38
1.74

Tables:   1

The End!