Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014348.1 Corchorus olitorius cultivar O-4 contig14381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57748

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1050--1107
29
2.0
30
86
3
82
32
10
22
34
1.88
22290--22342
26
1.9
26
85
11
70
26
9
11
52
1.67
29890--29929
3
13.3
3
100
0
80
35
0
0
65
0.93
30399--30534
33
4.2
33
66
22
99
45
0
3
50
1.24
30399--30537
9
16.1
9
65
19
57
45
0
3
50
1.24
30475--30538
22
2.9
21
73
13
56
48
0
1
50
1.10
30764--30794
3
10.3
3
100
0
62
32
0
0
67
0.91
32324--32666
170
2.0
170
97
0
650
26
16
22
34
1.95
33897--33969
7
9.8
8
74
16
59
35
1
1
61
1.13
34492--34520
12
2.5
12
94
5
51
24
0
13
62
1.32
35106--35202
31
3.2
30
78
16
103
37
11
23
27
1.89
39176--39264
45
2.1
42
85
8
117
39
24
4
31
1.75
41099--41156
26
2.2
27
81
3
64
34
13
20
31
1.92
56395--56428
17
2.0
17
100
0
68
35
11
17
35
1.87

Tables:   1

The End!