Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014350.1 Corchorus olitorius cultivar O-4 contig14383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77254

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10727--10770
23
1.9
23
86
9
63
2
18
4
75
1.09
15480--15569
32
2.8
32
86
6
112
35
22
17
24
1.95
24145--24194
26
2.0
24
88
11
75
62
8
2
28
1.35
24325--24378
28
1.9
28
92
0
90
31
11
16
40
1.84
25415--25468
26
2.1
26
89
0
81
20
16
20
42
1.89
29675--30301
40
14.9
40
77
10
516
18
26
19
35
1.95
29674--30328
127
5.1
127
81
8
683
18
27
19
35
1.94
29672--30258
167
3.5
166
83
8
641
18
27
19
35
1.95
29705--30387
86
8.0
86
84
7
645
18
26
19
35
1.95
36235--36312
28
2.8
28
90
0
129
30
47
16
5
1.68
44792--44836
21
2.1
21
87
0
63
33
31
20
15
1.93
50958--50993
19
1.9
18
88
5
54
41
2
22
33
1.68
52993--53057
34
1.9
34
93
0
112
50
13
3
32
1.57
54687--54886
63
3.2
62
85
3
285
46
18
9
27
1.78
55338--55388
18
2.8
18
96
0
93
35
25
19
19
1.95
62543--62589
20
2.3
20
92
0
76
34
38
14
12
1.85
63023--63058
17
2.1
18
89
5
56
13
5
13
66
1.41
75108--75157
20
2.4
21
83
12
68
16
16
18
50
1.79

Tables:   1

The End!