Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014355.1 Corchorus olitorius cultivar O-4 contig14388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49805

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8354--8411
19
2.9
20
87
5
82
36
12
20
31
1.89
8354--8412
21
3.0
20
87
5
84
35
11
20
32
1.89
9899--9942
23
1.9
23
81
9
54
61
0
13
25
1.32
9918--10054
69
2.1
67
87
8
201
48
2
13
35
1.55
15009--15268
135
1.9
135
100
0
520
22
18
22
35
1.96
23553--23989
217
2.0
212
90
3
678
31
9
16
42
1.80
23884--23921
20
2.0
20
89
5
60
31
0
18
50
1.47
24005--24042
20
2.0
20
89
5
60
31
0
18
50
1.47
23882--24124
121
2.0
121
92
1
407
32
7
17
42
1.78
24110--24135
13
2.0
13
100
0
52
46
0
15
38
1.46
45458--45498
21
2.0
21
85
0
55
58
0
4
36
1.20
46160--46488
43
7.8
41
85
9
441
41
25
10
22
1.84
46160--46488
84
3.9
84
94
0
568
41
25
10
22
1.84
48046--48090
19
2.3
19
84
3
54
28
8
11
51
1.68
48627--48665
21
1.9
21
84
5
53
35
10
2
51
1.50

Tables:   1

The End!