Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014357.1 Corchorus olitorius cultivar O-4 contig14390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1456
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32


Found at i:1137 original size:4 final size:4

Alignment explanation


    Indices: 1130--1160  Score: 62
    Period size: 4  Copynumber: 7.8  Consensus size: 4

       1120 AAAAAAAAAA

                                                  
       1130 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
          1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA

       1161 ATAAATGGTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (4 bp):   
AAAG

Done.