Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014359.1 Corchorus olitorius cultivar O-4 contig14392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76900

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3566--3628
30
2.1
30
100
0
126
41
20
6
31
1.77
3850--3941
29
3.2
29
89
3
132
41
22
16
19
1.90
16722--16793
27
2.7
27
95
0
126
26
13
40
19
1.89
16714--16804
27
3.4
27
87
0
119
24
18
37
19
1.94
25580--25620
3
13.7
3
100
0
82
68
0
31
0
0.90
39708--39874
33
5.4
32
70
16
120
47
1
21
29
1.61
39885--39956
19
3.8
19
92
3
128
52
0
19
27
1.46
39885--40082
18
10.4
18
72
15
141
51
0
19
28
1.47
39885--40020
37
3.4
37
79
18
166
52
0
19
27
1.47
39916--40082
64
2.5
66
86
10
223
50
0
19
29
1.48
39993--40116
52
2.4
52
98
0
239
48
0
19
32
1.49
40011--40358
86
4.2
86
73
16
342
48
0
20
31
1.50
40063--40150
34
2.6
34
98
0
167
48
0
19
31
1.49
40097--40514
52
8.0
52
94
0
701
47
0
20
31
1.53
40183--40220
18
2.1
18
90
0
58
50
0
21
28
1.49
40235--40272
18
2.1
18
95
0
67
50
0
18
31
1.47
40410--40684
86
3.3
84
73
16
214
47
2
20
30
1.62
40097--40514
157
2.7
156
93
3
682
47
0
20
31
1.53
40499--40634
53
2.6
51
77
12
141
46
0
22
30
1.57
40496--40650
25
5.9
25
70
13
98
48
1
20
29
1.60
40542--40650
51
2.1
52
83
10
134
48
2
19
29
1.63
40668--40707
20
2.0
20
90
4
64
45
0
25
30
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42891--42943
22
2.4
23
84
15
76
1
3
15
79
0.96
42889--42943
11
5.0
11
74
14
51
1
5
14
78
1.02
43155--43206
25
2.1
25
82
13
63
21
11
0
67
1.22
43210--43239
2
15.0
2
92
0
51
46
3
0
50
1.18
44078--44118
20
2.0
21
95
4
75
63
14
12
9
1.52
46318--46347
2
15.5
2
93
6
53
50
0
0
50
1.00
51907--51972
32
2.1
32
94
0
114
50
6
21
22
1.71
52676--52713
20
1.9
20
88
0
58
50
18
0
31
1.47
61785--61828
21
2.1
21
100
0
88
13
34
38
13
1.84
73571--73599
2
15.0
2
92
7
51
51
0
0
48
1.00
74616--74715
50
2.0
50
98
0
191
41
16
7
36
1.75
76145--76545
206
2.0
199
95
3
721
45
8
10
35
1.68
76610--76656
25
1.9
25
87
12
71
55
8
6
29
1.55
76647--76727
39
2.0
40
92
2
137
37
3
8
50
1.51

Tables:   1

The End!