Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014364.1 Corchorus olitorius cultivar O-4 contig14397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53902

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--30
2
15.0
2
100
0
60
0
50
0
50
1.00
1813--1860
21
2.2
22
88
7
71
66
6
2
25
1.26
2424--2472
15
3.2
16
75
18
59
6
44
0
48
1.27
2837--2878
15
2.8
15
85
10
59
0
47
0
52
1.00
24335--24361
1
27.0
1
100
0
54
100
0
0
0
0.00
28599--28629
15
2.1
15
93
0
53
29
12
12
45
1.80
30336--30370
18
1.9
18
100
0
70
20
0
28
51
1.47
30618--30653
8
4.4
8
93
6
63
77
0
22
0
0.76
30618--30653
17
2.2
17
95
5
65
77
0
22
0
0.76
32549--32622
36
2.0
37
86
2
105
25
29
9
35
1.88
36416--36446
7
4.4
7
91
0
53
25
29
0
45
1.54
37112--37147
18
2.0
19
89
10
58
22
8
25
44
1.80
37184--37221
19
2.0
20
89
5
60
31
0
18
50
1.47
37279--37306
13
2.2
13
100
0
56
46
0
14
39
1.44
38341--38374
16
2.1
16
88
0
50
64
5
14
14
1.46
39307--39338
2
16.0
2
93
0
55
50
3
46
0
1.17
42103--42155
27
1.9
28
84
3
72
60
11
11
16
1.59
42103--42156
28
1.9
28
81
7
65
61
11
11
16
1.57
42103--42161
27
2.1
28
81
3
66
62
10
10
16
1.53
45874--46031
77
2.1
77
98
0
307
32
12
16
38
1.86
49256--49293
19
2.0
20
94
5
69
57
15
0
26
1.38
50259--50307
24
2.0
24
92
0
80
6
26
2
65
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52666--52706
21
2.1
20
86
13
59
46
21
0
31
1.52
52446--53137
224
3.2
220
90
5
1050
38
19
7
34
1.79

Tables:   1

The End!