Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014368.1 Corchorus olitorius cultivar O-4 contig14401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25522

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
549--592
16
2.6
17
82
10
54
50
15
4
29
1.64
11382--11889
178
2.9
178
93
1
840
34
13
16
35
1.88
15503--15560
26
2.2
26
96
0
107
27
22
29
20
1.99
15901--16362
199
2.3
199
88
3
698
34
13
16
35
1.88
16712--16742
16
1.9
16
93
0
53
54
0
9
35
1.33
17328--17383
20
3.0
19
80
19
73
26
25
14
33
1.94
18300--18335
12
2.8
13
95
4
65
25
25
13
36
1.93
18300--18343
12
3.6
12
87
6
61
25
20
15
38
1.92
19436--19471
12
2.8
13
95
4
65
25
25
13
36
1.93
19436--19479
12
3.6
12
87
6
61
25
20
15
38
1.92
19802--20202
221
1.8
219
79
8
465
49
4
15
30
1.65
20330--20361
13
2.4
14
85
15
50
28
0
18
53
1.45
21853--22031
86
2.1
86
94
1
313
31
10
9
48
1.70
22020--22075
22
2.6
22
72
13
53
26
8
12
51
1.69
22112--22162
23
2.3
23
75
3
59
19
7
21
50
1.72
22416--22489
22
3.5
22
75
3
62
33
12
8
45
1.71
22438--22493
22
2.6
22
82
2
69
30
10
7
51
1.63

Tables:   1

The End!