Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014372.1 Corchorus olitorius cultivar O-4 contig14405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35076

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4031--4137
53
2.0
53
96
0
196
22
17
11
48
1.79
4147--4243
47
2.1
47
98
0
185
40
9
14
36
1.78
6501--6530
15
2.0
15
100
0
60
33
0
20
46
1.51
9479--9572
47
2.0
47
100
0
188
19
25
10
44
1.82
10716--10753
11
3.5
11
89
10
51
39
0
2
57
1.12
11296--12115
409
2.0
409
91
0
1329
30
17
20
31
1.95
14284--14325
22
2.0
21
86
13
61
50
4
19
26
1.67
14307--14368
21
2.9
21
79
13
63
48
9
17
24
1.77
14348--14495
22
6.8
21
74
9
100
39
9
11
39
1.74
14415--14496
22
3.8
22
83
1
103
40
12
9
37
1.76
16348--16400
16
3.3
16
76
10
54
64
11
0
24
1.26
16872--16912
22
1.9
22
85
5
57
68
2
2
26
1.15
33454--33549
22
4.3
23
76
7
101
39
10
10
39
1.74
33454--33549
44
2.2
44
84
3
122
39
10
10
39
1.74
34440--34466
2
13.5
2
100
0
54
51
0
48
0
1.00

Tables:   1

The End!