Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014377.1 Corchorus olitorius cultivar O-4 contig14410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70836

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
216--272
25
2.4
25
88
5
82
31
5
3
59
1.36
3596--3723
66
2.0
66
89
6
199
28
10
9
51
1.68
4130--4169
12
3.3
12
85
0
53
87
0
2
10
0.63
27347--27389
21
2.1
21
91
4
70
11
34
9
44
1.73
27354--27395
21
2.0
21
90
4
68
11
38
7
42
1.69
35426--35466
16
2.5
17
84
11
50
31
7
0
60
1.24
35419--35470
25
2.1
24
85
3
68
30
5
1
61
1.30
37281--37387
56
1.9
56
96
0
196
24
14
17
42
1.87
48861--48901
22
2.0
21
90
9
66
51
0
34
14
1.43
58384--58440
30
1.9
30
100
0
114
50
29
5
14
1.64
58384--58440
15
3.7
15
81
11
71
50
29
5
14
1.64
66218--66269
26
2.0
26
92
0
86
36
1
21
40
1.64
66276--66300
13
1.9
13
100
0
50
0
28
24
48
1.52
67397--67435
17
2.3
17
90
0
60
46
17
5
30
1.70
68226--68291
33
2.0
33
93
0
114
43
7
25
22
1.79
69663--69751
42
2.1
43
87
6
128
20
19
10
50
1.75

Tables:   1

The End!