Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014380.1 Corchorus olitorius cultivar O-4 contig14413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13858
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:8972 original size:21 final size:21

Alignment explanation


    Indices: 8948--9014  Score: 73
    Period size: 21  Copynumber: 3.1  Consensus size: 21

       8938 TCAATAAAGC

                                 
       8948 AAATTTGAATTTCCAGCAACT
          1 AAATTTGAATTTCCAGCAACT

                   *     *      * 
       8969 AAATTTACAATTTGCAGCAAGT
          1 AAATTT-GAATTTCCAGCAACT

                      *           
       8991 AAA-TTGCAAATTCCAGCAACT
          1 AAATTTG-AATTTCCAGCAACT

               
       9012 AAA
          1 AAA

       9015 ATAAACTACT


Statistics
Matches: 37,  Mismatches: 7, Indels: 4
        0.77            0.15        0.08

Matches are distributed among these distances:
  21   22  0.59
  22   15  0.41

ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28


Consensus pattern (21 bp):   
AAATTTGAATTTCCAGCAACT

Found at i:8986 original size:22 final size:21

Alignment explanation


    Indices: 8955--9014  Score: 75
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       8945 AGCAAATTTG

                                  
       8955 AATTTCCAGCAACTAAATTTAC
          1 AATTTCCAGCAACTAAA-TTAC

                 *      *      * 
       8977 AATTTGCAGCAAGTAAATTGC
          1 AATTTCCAGCAACTAAATTAC

              *              
       8998 AAATTCCAGCAACTAAA
          1 AATTTCCAGCAACTAAA

       9015 ATAAACTACT


Statistics
Matches: 32,  Mismatches: 6, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  21   17  0.53
  22   15  0.47

ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27


Consensus pattern (21 bp):   
AATTTCCAGCAACTAAATTAC

Done.