Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014381.1 Corchorus olitorius cultivar O-4 contig14414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46990

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
300--351
22
2.4
22
87
3
70
48
7
11
32
1.68
771--811
11
3.8
11
78
18
50
80
17
2
0
0.82
1123--1299
86
2.1
84
94
3
309
49
6
11
32
1.65
1335--1374
20
2.0
20
90
5
62
52
5
10
32
1.56
1742--1794
26
2.0
27
88
7
81
58
9
15
16
1.62
4185--4254
22
3.2
22
81
2
88
41
12
5
40
1.67
6509--6569
26
2.2
28
82
5
81
37
21
19
21
1.94
9224--9299
21
3.6
21
83
3
98
42
10
7
39
1.69
9220--9343
22
5.8
21
74
4
95
43
12
7
37
1.70
9220--9336
43
2.7
43
87
1
153
42
12
7
36
1.72
9220--9389
22
7.9
21
67
16
71
38
12
7
41
1.71
9347--9389
20
2.1
20
91
4
68
23
13
9
53
1.69
25328--25430
50
2.1
50
83
3
127
28
16
4
50
1.65
26271--26322
15
3.5
15
89
0
77
40
15
25
19
1.90
26271--26335
15
4.3
15
86
0
76
41
13
24
20
1.88
41121--41151
4
7.8
4
100
0
62
48
0
0
51
1.00
43016--43064
21
2.3
21
89
6
73
6
30
40
22
1.78

Tables:   1

The End!