Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014387.1 Corchorus olitorius cultivar O-4 contig14420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39440

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1281--1636
118
3.0
118
92
2
615
33
7
24
34
1.84
2522--2593
29
2.4
31
77
13
78
33
6
27
31
1.83
3085--3162
22
3.0
28
64
21
78
57
11
6
24
1.57
3211--3320
54
2.0
56
85
7
154
63
10
5
20
1.45
4978--5105
54
2.4
54
89
7
199
60
7
1
31
1.33
7866--7903
19
1.9
19
89
5
58
50
7
13
28
1.69
9525--9761
116
2.0
116
97
0
447
48
6
8
36
1.59
11383--11494
22
5.1
22
80
7
113
38
9
17
33
1.83
11641--11717
22
3.6
22
77
7
68
28
12
10
48
1.75
11838--11897
22
2.7
22
82
5
77
38
11
13
36
1.81
11903--11966
23
2.8
22
86
9
83
40
17
4
37
1.70
11965--12121
22
7.4
22
73
12
141
33
17
8
40
1.81
11931--12025
38
2.6
38
83
9
119
37
18
6
36
1.77
11960--12144
44
4.3
44
78
10
172
35
16
8
39
1.79
12064--12143
22
3.7
21
80
6
79
40
12
10
37
1.77
12250--12818
22
25.7
22
69
15
250
35
16
10
37
1.83
12985--13023
20
2.0
20
85
10
53
64
2
5
28
1.28
36200--36592
30
13.0
30
90
0
543
31
18
18
32
1.95
36209--36661
30
14.8
32
85
3
196
32
17
17
32
1.93
36209--36657
60
7.4
62
87
4
310
32
17
18
32
1.94

Tables:   1

The End!