Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014389.1 Corchorus olitorius cultivar O-4 contig14422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50318

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1049--1074
6
4.3
6
100
0
52
19
15
30
34
1.93
3641--3705
31
2.1
32
82
8
80
35
32
20
12
1.89
5058--6017
437
2.2
441
84
3
1222
31
13
13
41
1.83
8431--8459
2
14.5
2
100
0
58
48
0
0
51
1.00
8459--8497
2
19.5
2
100
0
78
0
0
48
51
1.00
11097--11136
21
1.9
21
84
0
53
32
32
17
17
1.93
12253--12293
18
2.3
18
100
0
82
56
14
17
12
1.68
12261--12301
18
2.3
18
86
0
55
58
14
14
12
1.63
28503--28532
15
1.9
16
93
6
53
16
10
6
66
1.41
34967--34996
15
2.0
15
93
0
51
36
16
33
13
1.88
35468--35515
22
2.2
23
77
11
55
27
8
16
47
1.75
46555--46756
102
2.0
101
93
2
345
42
20
15
21
1.89
47905--48047
74
1.9
74
89
0
223
39
23
9
27
1.85

Tables:   1

The End!