Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014394.1 Corchorus olitorius cultivar O-4 contig14427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96712

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
419--734
37
8.6
37
79
6
311
22
17
16
43
1.87
392--660
74
3.6
74
85
5
364
22
17
16
43
1.88
392--742
74
4.8
74
83
5
356
22
17
15
44
1.86
422--734
147
2.1
148
89
1
477
22
17
15
44
1.87
392--745
111
3.2
109
81
6
338
23
17
15
43
1.87
569--804
111
2.1
111
80
1
258
23
18
15
42
1.88
810--851
18
2.4
17
84
11
57
23
14
9
52
1.71
855--995
56
2.5
55
80
13
139
29
17
21
31
1.96
1048--1126
34
2.4
34
89
2
115
44
17
6
31
1.74
1282--1427
7
20.9
7
94
0
220
56
23
1
17
1.49
3011--3039
10
3.0
10
95
5
51
68
0
0
31
0.89
7520--8516
375
2.6
377
94
2
1729
40
16
13
28
1.87
10547--10659
57
2.0
57
98
0
217
29
18
22
30
1.97
11037--11069
6
5.5
6
100
0
66
0
48
0
51
1.00
11407--11548
49
3.0
47
82
9
169
50
5
16
27
1.67
12834--12869
9
4.1
9
89
3
56
33
19
0
47
1.50
18484--18654
85
2.0
84
87
5
247
29
11
19
39
1.87
26209--26265
13
4.8
12
77
14
64
52
8
3
35
1.50
26209--26265
24
2.4
24
88
5
80
52
8
3
35
1.50
26209--26265
12
4.8
11
81
14
69
52
8
3
35
1.50
26438--26478
19
2.2
19
90
0
64
60
17
7
14
1.55
27529--27615
36
2.4
36
88
0
102
9
39
39
12
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29837--29894
27
2.1
27
81
6
64
20
17
1
60
1.45
29813--30039
113
2.0
113
100
0
454
25
16
7
50
1.71
29950--30007
27
2.1
27
81
6
64
20
17
1
60
1.45
30877--30920
12
3.7
12
100
0
88
0
15
31
52
1.44
33857--34113
123
2.0
129
88
7
382
50
2
10
36
1.50
41737--41779
21
2.0
21
86
0
59
48
2
39
9
1.48
48650--48711
30
2.1
30
100
0
124
46
4
22
25
1.71
54576--54794
120
1.8
120
87
2
323
36
12
14
36
1.84
54894--54982
46
1.9
46
93
0
151
32
28
16
22
1.96
61292--61327
13
2.7
13
91
4
54
55
13
8
22
1.65
63453--63478
10
2.6
10
100
0
52
88
0
11
0
0.52
74456--74500
21
2.1
21
87
0
63
44
8
4
42
1.56
76007--76046
14
2.7
15
88
7
55
37
5
20
37
1.74
80502--80534
14
2.4
14
90
10
50
45
0
3
51
1.16
81631--81660
16
1.9
15
93
6
51
33
0
6
60
1.23
88460--88838
123
3.0
123
94
3
641
38
10
1
49
1.46
88824--88862
14
2.9
13
80
3
51
41
2
2
53
1.28
93955--94002
22
2.2
23
77
11
55
14
27
39
18
1.90

Tables:   1

The End!