Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014395.1 Corchorus olitorius cultivar O-4 contig14428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49457

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2334--2384
7
7.6
7
82
12
63
54
0
1
43
1.11
2596--2625
15
2.0
15
100
0
60
20
6
40
33
1.78
6360--6416
24
2.4
24
100
0
114
49
12
17
21
1.79
6693--6801
45
2.4
45
81
4
130
40
17
15
26
1.89
8001--8089
3
29.7
3
75
4
63
21
39
5
33
1.77
7992--8050
30
2.0
30
89
0
91
20
37
8
33
1.83
8025--8089
21
3.1
21
78
12
71
20
38
6
35
1.77
8049--8089
12
3.4
12
96
0
73
19
41
4
34
1.73
10872--10974
53
1.9
53
96
0
188
48
3
16
31
1.64
24611--24641
14
2.2
14
100
0
62
29
6
6
58
1.48
25191--25226
2
18.0
2
88
0
54
47
2
2
47
1.31
26606--26658
22
2.4
22
83
0
70
39
7
7
45
1.61
28155--28344
95
2.0
95
93
0
326
34
13
17
35
1.88
28330--28390
27
2.3
26
83
16
72
45
1
8
44
1.43
28725--29899
332
3.5
330
82
3
1455
35
17
14
32
1.91
31984--32100
59
2.0
59
88
3
173
21
16
18
43
1.88
32192--32463
137
2.0
137
97
1
510
40
8
7
44
1.62
35572--35620
7
7.3
7
93
2
75
42
0
18
38
1.50
35572--35628
21
2.9
21
82
10
75
42
1
17
38
1.60
35553--35641
6
14.8
6
78
15
62
47
1
14
37
1.52
37692--37750
18
3.2
18
67
21
50
40
5
16
37
1.71
42447--42471
13
1.9
13
100
0
50
48
4
8
40
1.51

Tables:   1

The End!