Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014397.1 Corchorus olitorius cultivar O-4 contig14430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1350
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:884 original size:27 final size:27

Alignment explanation


    Indices: 846--950  Score: 165
    Period size: 27  Copynumber: 3.9  Consensus size: 27

        836 GTACTTGAAG

                                 *     
        846 TGACCAAAATGCCCCTGGATGTGCAAA
          1 TGACCAAAATGCCCCTGGATGAGCAAA

                                 *     
        873 TGACCAAAATGCCCCTGGATGCGCAAA
          1 TGACCAAAATGCCCCTGGATGAGCAAA

                                    **  
        900 TGACCAAAATGCCCCCTGGATGAGTGAA
          1 TGACCAAAATG-CCCCTGGATGAGCAAA

                                   
        928 TGACCAAAATGCCCCTGGATGAG
          1 TGACCAAAATGCCCCTGGATGAG

        951 TGACCCAAGT


Statistics
Matches: 73,  Mismatches: 4, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  27   49  0.67
  28   24  0.33

ACGTcount: A:0.32, C:0.27, G:0.24, T:0.17


Consensus pattern (27 bp):   
TGACCAAAATGCCCCTGGATGAGCAAA

Done.