Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001440.1 Corchorus olitorius cultivar O-4 contig01440, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30


Found at i:757 original size:13 final size:13

Alignment explanation


    Indices: 739--764  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        729 GAACATATTT

                         
        739 TAAGCAATGGAAG
          1 TAAGCAATGGAAG

                         
        752 TAAGCAATGGAAG
          1 TAAGCAATGGAAG

        765 GTTTGAATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.08, G:0.31, T:0.15


Consensus pattern (13 bp):   
TAAGCAATGGAAG
Done.