Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014401.1 Corchorus olitorius cultivar O-4 contig14434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21


Found at i:165 original size:15 final size:15

Alignment explanation


    Indices: 107--166  Score: 57
    Period size: 15  Copynumber: 4.0  Consensus size: 15

         97 GGGTTGGCAT

                       *   
        107 GGCATAGGTGGCAAC
          1 GGCATAGGTGGAAAC

                  * *   *  
        122 GGCATACGCGGATAC
          1 GGCATAGGTGGAAAC

                *    *     
        137 GGCAAAGGTTGAAAC
          1 GGCATAGGTGGAAAC

             *             
        152 GCCATAGGTGGAAAC
          1 GGCATAGGTGGAAAC

        167 ATCATTGGCG


Statistics
Matches: 33,  Mismatches: 12, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
  15   33  1.00

ACGTcount: A:0.32, C:0.20, G:0.35, T:0.13


Consensus pattern (15 bp):   
GGCATAGGTGGAAAC
Done.