Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014402.1 Corchorus olitorius cultivar O-4 contig14435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64362

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2273--2457
93
2.0
93
86
0
262
34
12
2
50
1.54
4241--4265
11
2.3
11
100
0
50
0
8
0
92
0.40
4727--4874
73
2.0
72
84
1
188
32
16
15
35
1.91
12054--12124
31
2.3
31
80
2
81
33
18
18
29
1.95
13494--13537
19
2.3
19
84
7
54
6
9
2
81
0.94
21307--21376
33
2.1
33
89
0
104
32
25
18
22
1.97
28463--28536
16
4.6
16
73
6
69
9
12
39
39
1.75
31453--31497
2
24.0
2
80
13
51
44
2
2
51
1.26
32722--32954
22
10.5
22
71
9
123
35
9
18
37
1.82
32719--32936
66
3.3
67
80
7
221
33
9
19
38
1.83
32959--33285
22
14.7
21
70
16
101
39
11
17
32
1.85
33160--33305
44
3.3
44
77
7
154
42
9
14
33
1.78
33391--33974
22
26.9
22
70
8
257
38
9
16
35
1.82
33939--33981
22
2.0
22
81
9
52
39
11
18
30
1.86
36511--36566
5
10.2
5
87
12
67
55
1
1
41
1.21
36932--37016
43
2.0
43
92
0
143
49
8
18
23
1.74
39612--39648
17
2.2
16
90
4
56
59
2
27
10
1.44
42967--42993
2
13.5
2
100
0
54
48
0
0
51
1.00
46157--46188
1
32.0
1
100
0
64
0
0
0
100
0.00
56206--56309
27
3.8
26
76
9
93
38
26
18
16
1.92
57646--57687
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!