Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014404.1 Corchorus olitorius cultivar O-4 contig14437, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95805

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1539--1718
71
2.7
67
87
10
244
38
6
12
42
1.68
2578--2651
3
24.3
3
97
2
139
33
0
0
66
0.92
6942--7000
27
2.1
28
81
3
66
32
10
13
44
1.77
7081--7193
3
37.7
3
100
0
226
32
0
0
67
0.91
8195--8256
27
2.3
27
91
0
106
22
17
19
40
1.91
10152--10227
19
3.7
19
75
13
71
19
2
18
59
1.50
10150--10228
20
3.9
20
74
12
72
20
2
17
59
1.49
10150--10229
21
3.9
20
76
11
81
20
2
17
60
1.48
11738--11771
14
2.4
14
95
5
59
35
26
20
17
1.95
16052--16093
2
21.0
2
100
0
84
50
0
0
50
1.00
16482--16748
144
1.9
138
86
4
372
39
10
12
38
1.77
18124--18179
21
2.6
22
83
11
80
39
8
12
39
1.75
18482--18507
1
26.0
1
100
0
52
100
0
0
0
0.00
24913--24957
22
2.0
22
87
12
65
71
0
26
2
0.98
26701--26743
22
2.2
19
84
16
52
62
0
27
9
1.25
27152--27340
63
3.0
63
90
1
281
26
14
22
36
1.93
27152--27340
21
9.0
21
92
1
254
26
14
22
36
1.93
27408--27469
21
3.0
21
90
4
90
29
14
20
35
1.93
32049--32082
3
11.3
3
100
0
68
0
32
0
67
0.91
33165--33214
6
8.5
6
85
12
52
4
2
8
86
0.78
39258--39285
2
14.0
2
100
0
56
50
0
0
50
1.00
40842--40950
38
2.9
38
82
13
152
25
18
13
42
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51378--51404
2
13.5
2
100
0
54
0
48
0
51
1.00
52429--52461
12
2.8
12
95
0
57
33
18
24
24
1.97
61681--62052
178
2.1
178
82
4
455
36
15
13
34
1.87
62242--62291
22
2.3
22
100
0
100
34
0
4
62
1.14
62272--62325
26
2.1
26
96
0
99
38
5
11
44
1.63
63094--63163
34
2.1
34
100
0
140
42
12
15
28
1.84
66861--66891
2
15.5
2
100
0
62
51
0
0
48
1.00
71584--71644
33
1.9
31
86
6
86
60
3
13
22
1.47
72536--72571
16
2.2
16
90
9
56
58
8
0
33
1.28
72985--73298
159
2.0
160
93
3
542
38
13
10
37
1.79
75990--76037
14
3.4
14
82
8
53
39
12
0
47
1.41
76128--76249
62
2.0
62
95
0
217
38
11
0
50
1.39
76873--76910
13
2.9
13
96
0
67
34
5
0
60
1.19
77996--78316
174
1.8
174
87
2
475
35
15
14
34
1.88
79419--79470
25
2.1
25
92
0
86
32
19
9
38
1.84
83169--83216
25
1.9
25
91
0
78
35
20
10
33
1.87
83966--84028
27
2.2
29
75
13
78
49
6
3
41
1.44

Tables:   1

The End!