Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014405.1 Corchorus olitorius cultivar O-4 contig14438, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2000
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29


Found at i:1758 original size:42 final size:44

Alignment explanation


    Indices: 1707--1800  Score: 122
    Period size: 45  Copynumber: 2.2  Consensus size: 44

       1697 AGTGCATTAT

                                  *  *              *   
       1707 CTAA-ATTCTACT-CT-ATCTCTAGGTAATTCATCAAAATCAAG
          1 CTAATATTCTACTCCTCATCTCAAGATAATTCATCAAAATAAAG

              *                                          
       1748 CTGATATTCTACTCCTCCATCTCAAGATAATTCATCAAAATAAAG
          1 CTAATATTCTACTCCT-CATCTCAAGATAATTCATCAAAATAAAG

                    
       1793 CTAATATT
          1 CTAATATT

       1801 AATTTTTGCT


Statistics
Matches: 44,  Mismatches: 5, Indels: 4
        0.83            0.09        0.08

Matches are distributed among these distances:
  41    3  0.07
  42    8  0.18
  43    2  0.05
  45   31  0.70

ACGTcount: A:0.37, C:0.22, G:0.06, T:0.34


Consensus pattern (44 bp):   
CTAATATTCTACTCCTCATCTCAAGATAATTCATCAAAATAAAG
Done.