Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014421.1 Corchorus olitorius cultivar O-4 contig14454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54535

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8692--8778
43
2.0
44
88
2
131
41
5
16
36
1.72
19887--19926
14
2.9
14
85
10
55
0
2
15
82
0.77
20393--20428
2
18.0
2
94
0
63
47
0
0
52
1.00
23482--23637
22
7.1
22
74
13
101
42
10
14
33
1.79
24636--24732
21
4.4
21
79
14
106
29
19
23
26
1.98
27169--27273
33
3.2
33
82
2
122
25
7
20
45
1.78
28769--28799
9
3.4
9
90
0
53
9
19
0
70
1.14
28775--28819
20
2.3
20
82
14
58
4
13
2
80
0.97
29873--29912
21
1.9
21
89
0
62
45
7
22
25
1.78
29975--30071
41
2.4
40
76
8
106
48
15
13
22
1.80
32617--32701
26
3.2
26
86
3
134
42
25
15
16
1.87
32590--32701
26
4.2
26
82
5
125
41
25
15
17
1.89
44098--44137
18
2.2
18
100
0
80
37
0
10
52
1.35
45165--45235
34
2.1
34
100
0
142
40
26
11
21
1.87
45346--45442
48
2.0
49
91
2
160
28
18
15
37
1.92
47124--47348
110
2.0
113
89
3
348
27
11
27
34
1.91
48685--48726
21
2.0
21
95
0
75
33
14
26
26
1.94
52147--52202
29
1.9
29
82
7
69
44
7
23
25
1.78
52856--52882
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!