Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014423.1 Corchorus olitorius cultivar O-4 contig14456, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75852

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
960--989
12
2.6
11
90
10
51
90
0
0
10
0.47
5172--5225
18
3.0
18
80
0
63
33
12
25
27
1.93
6887--6912
9
2.9
9
100
0
52
11
11
11
65
1.48
10044--10229
94
2.0
95
90
1
293
38
19
2
38
1.66
11123--11222
31
3.3
30
72
10
96
38
16
19
27
1.92
11060--11227
60
2.8
60
87
6
241
35
18
19
27
1.95
11268--11489
60
3.7
60
91
1
347
31
19
15
33
1.93
11265--11490
31
7.5
29
65
15
111
31
19
16
33
1.94
11359--11457
29
3.3
29
71
10
101
33
21
13
32
1.91
12050--12141
42
2.2
41
90
3
139
36
30
11
20
1.89
15282--15405
47
2.7
47
91
1
196
39
19
25
15
1.91
15407--15524
57
2.1
56
87
4
166
46
18
20
14
1.84
18140--18232
42
2.2
42
96
1
168
34
32
13
19
1.91
18531--18580
25
2.0
25
84
4
64
16
14
8
62
1.54
22386--22459
35
2.1
35
97
0
139
47
12
21
18
1.81
32785--32811
13
2.1
13
100
0
54
29
37
0
33
1.58
35831--36225
77
5.1
74
87
5
466
20
17
25
35
1.95
35862--36218
154
2.3
154
90
0
534
20
18
26
33
1.96
43565--43972
226
1.8
226
90
0
654
21
24
12
41
1.88
44958--45095
60
2.3
60
89
0
204
36
18
18
26
1.94
45146--45303
60
2.6
60
83
7
196
27
17
17
38
1.91
46064--46133
35
1.9
37
82
5
90
22
17
2
57
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46151--46214
33
1.9
33
87
6
94
21
12
10
54
1.68
46881--46927
23
2.0
23
95
0
85
38
21
10
29
1.87
52852--52964
60
1.9
60
87
3
165
32
4
27
35
1.77
69008--69067
30
2.0
30
87
6
86
31
20
8
40
1.82
69533--69562
13
2.4
13
94
5
53
60
3
20
16
1.50
69985--70038
26
2.1
26
100
0
108
22
0
25
51
1.48
70410--70609
4
53.0
4
67
16
106
25
6
0
67
1.18
70416--70612
44
4.5
44
85
4
245
25
6
0
67
1.19
70431--70612
88
2.0
90
89
2
278
25
6
0
67
1.17
74781--74837
21
2.7
21
66
0
51
45
14
31
8
1.75

Tables:   1

The End!