genome.fa.s14424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014424.1 Corchorus olitorius cultivar O-4 contig14457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47163

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761--868	56	1.9	56	100	0	216	35	14	29	20	1.93
3233--3269	18	2.1	18	100	0	74	59	21	5	13	1.54
10115--10310	22	9.0	22	69	12	82	38	16	10	33	1.84
10136--10217	43	1.9	43	87	0	119	39	17	9	34	1.82
10116--10267	65	2.3	65	82	6	173	38	16	10	34	1.83
10134--10236	43	2.3	43	77	11	102	37	13	12	35	1.83
10444--10635	22	8.8	22	70	7	97	36	11	10	41	1.76
10555--10655	44	2.3	43	83	3	123	39	8	13	37	1.77
10575--10656	22	3.7	22	75	6	94	40	10	12	36	1.78
10575--10675	44	2.3	44	85	0	130	36	11	12	38	1.81
11388--11421	13	2.6	14	90	9	54	61	0	11	26	1.30
12009--12069	32	1.9	32	89	0	95	21	24	24	29	1.99
16115--16143	13	2.2	13	100	0	58	55	0	20	24	1.44
17912--17965	23	2.5	22	85	11	69	33	16	1	48	1.57
17912--17965	14	3.9	14	80	4	56	33	16	1	48	1.57
19234--19491	22	11.7	22	70	14	140	36	9	18	36	1.83
19321--19386	21	3.1	20	82	6	78	33	9	15	42	1.78
19277--19469	44	4.4	44	78	6	185	36	9	18	35	1.84
19231--19491	44	5.9	44	74	11	160	36	9	18	35	1.83
20088--20129	21	2.0	21	86	9	59	16	0	35	47	1.47
21322--21407	37	2.3	38	91	2	138	53	6	4	34	1.49
22626--22690	27	2.3	29	76	7	71	33	7	20	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30852--31066	24	9.0	24	81	0	223	22	31	18	27	1.97
30854--31066	48	4.4	48	85	0	273	22	31	18	27	1.97
30854--31064	72	2.9	72	89	0	332	22	30	18	27	1.98
35356--35572	24	9.0	24	82	0	173	22	30	18	28	1.97
35358--35572	48	4.5	48	84	0	268	22	30	19	27	1.98
35358--35568	72	2.9	72	87	0	305	22	30	18	27	1.98
39646--39683	17	2.2	17	100	0	76	60	0	13	26	1.33
41844--41880	19	1.9	19	94	0	65	21	16	8	54	1.68
43290--43379	38	2.3	38	88	1	126	33	13	18	34	1.90
43316--43536	61	3.6	61	91	0	343	36	13	16	33	1.88
43356--43462	23	5.0	23	68	16	70	40	12	16	30	1.85
43417--43462	22	2.0	23	87	4	67	43	10	15	30	1.81
45525--45626	51	2.0	50	83	9	127	21	23	13	41	1.89

Tables:   1

The End!