Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014425.1 Corchorus olitorius cultivar O-4 contig14458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4367
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:3445 original size:22 final size:22

Alignment explanation


    Indices: 3420--3474  Score: 92
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       3410 ACAAGGGCTT

                                  
       3420 AAGCTATATGATCAAAGTGCAA
          1 AAGCTATATGATCAAAGTGCAA

                                  
       3442 AAGCTATATGATCAAAGTGCAA
          1 AAGCTATATGATCAAAGTGCAA

              *   *    
       3464 AAACTAAATGA
          1 AAGCTATATGA

       3475 AGCTAAATCA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  22   31  1.00

ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22


Consensus pattern (22 bp):   
AAGCTATATGATCAAAGTGCAA

Found at i:3637 original size:27 final size:29

Alignment explanation


    Indices: 3606--3683  Score: 106
    Period size: 29  Copynumber: 2.8  Consensus size: 29

       3596 GCGTGGCCTT

                                         
       3606 AAAATGACCAAAATGCCCCT-GA-ATATG
          1 AAAATGACCAAAATGCCCCTAGATATATG

            *       *               * *  
       3633 CAAATGACTAAAATGCCCCTAGATTTTTG
          1 AAAATGACCAAAATGCCCCTAGATATATG

                                  
       3662 AAAATGACCAAAATGCCCCTAG
          1 AAAATGACCAAAATGCCCCTAG

       3684 GTGATCCTAA


Statistics
Matches: 43,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  27   18  0.42
  28    2  0.05
  29   23  0.53

ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22


Consensus pattern (29 bp):   
AAAATGACCAAAATGCCCCTAGATATATG

Done.