Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014436.1 Corchorus olitorius cultivar O-4 contig14469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42260
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:433 original size:11 final size:11
Alignment explanation
Indices: 417--454 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
407 CCATCAAAAA
417 AAAAATCAATC
1 AAAAATCAATC
428 AAAAATCAAATC
1 AAAAATC-AATC
*
440 -AAAGTCAATC
1 AAAAATCAATC
450 AAAAA
1 AAAAA
455 AAATAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 4 0.17
11 15 0.65
12 4 0.17
ACGTcount: A:0.66, C:0.16, G:0.03, T:0.16
Consensus pattern (11 bp):
AAAAATCAATC
Found at i:438 original size:5 final size:5
Alignment explanation
Indices: 430--488 Score: 66
Period size: 5 Copynumber: 11.6 Consensus size: 5
420 AATCAATCAA
** *
430 AAATC AAATC AAAGTC -AATC AAAAA AAATA AAATC AAATC AAATC AAATC
1 AAATC AAATC AAA-TC AAATC AAATC AAATC AAATC AAATC AAATC AAATC
480 AAAATC AAA
1 -AAATC AAA
489 AGAGAATGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
4 2 0.04
5 38 0.81
6 7 0.15
ACGTcount: A:0.66, C:0.15, G:0.02, T:0.17
Consensus pattern (5 bp):
AAATC
Found at i:449 original size:15 final size:14
Alignment explanation
Indices: 420--488 Score: 54
Period size: 15 Copynumber: 4.9 Consensus size: 14
410 TCAAAAAAAA
420 AATC-AATCAAA--
1 AATCAAATCAAATC
431 AATCAAATCAAAGTC
1 AATCAAATCAAA-TC
** *
446 AATCAAAAAAAATAA
1 AATCAAATCAAAT-C
461 AATCAAATCAAATC
1 AATCAAATCAAATC
475 AAATCAAAATCAAA
1 -AATC-AAATCAAA
489 AGAGAATGGA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
11 4 0.09
12 7 0.16
14 1 0.02
15 25 0.56
16 8 0.18
ACGTcount: A:0.65, C:0.16, G:0.01, T:0.17
Consensus pattern (14 bp):
AATCAAATCAAATC
Found at i:463 original size:25 final size:25
Alignment explanation
Indices: 419--477 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
409 ATCAAAAAAA
* *
419 AAATCAATCAAAAATCAAATCAAAGTC
1 AAATCAA-AAAAAATAAAATCAAA-TC
446 -AATCAAAAAAAATAAAATCAAATC
1 AAATCAAAAAAAATAAAATCAAATC
470 AAATCAAA
1 AAATCAAA
478 TCAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 2 0.07
25 21 0.72
26 6 0.21
ACGTcount: A:0.66, C:0.15, G:0.02, T:0.17
Consensus pattern (25 bp):
AAATCAAAAAAAATAAAATCAAATC
Found at i:468 original size:10 final size:11
Alignment explanation
Indices: 418--488 Score: 80
Period size: 10 Copynumber: 6.8 Consensus size: 11
408 CATCAAAAAA
418 AAAATC-AATC
1 AAAATCAAATC
428 AAAAATCAAATC
1 -AAAATCAAATC
*
440 AAAGTC-AATC
1 AAAATCAAATC
*
450 AAAA-AAAAT-
1 AAAATCAAATC
459 AAAATCAAATC
1 AAAATCAAATC
470 -AAATCAAATC
1 AAAATCAAATC
480 AAAATCAAA
1 AAAATCAAA
489 AGAGAATGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
9 4 0.08
10 24 0.47
11 19 0.37
12 4 0.08
ACGTcount: A:0.66, C:0.15, G:0.01, T:0.17
Consensus pattern (11 bp):
AAAATCAAATC
Found at i:777 original size:1 final size:1
Alignment explanation
Indices: 771--799 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
761 TTCCAAGTGC
771 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
800 CCTCTAGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1144 original size:48 final size:48
Alignment explanation
Indices: 1065--1218 Score: 218
Period size: 48 Copynumber: 3.1 Consensus size: 48
1055 GAACAAGAAG
*
1065 TTTTACAATAAAATTGCTTTCCATTTATGAGTTCAAGATCAAAATTCGC
1 TTTT-CAATAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGC
* * *
1114 TTTTCAATAAAATTGCTTTCCATTCGTGAGTTCAATATCAAAATTTGC
1 TTTTCAATAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGC
* * *
1162 TTTTCAAAGTAAGATTGCATTCCATTTGTGAGTCCAAGATCAAAATTCGC
1 TTTTC-AA-TAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGC
1212 TTTTCAA
1 TTTTCAA
1219 AGGACATTGA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
48 45 0.48
49 8 0.09
50 40 0.43
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (48 bp):
TTTTCAATAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGC
Found at i:1204 original size:50 final size:50
Alignment explanation
Indices: 1073--1220 Score: 219
Period size: 50 Copynumber: 3.0 Consensus size: 50
1063 AGTTTTACAA
*
1073 TAAAATTGCTTTCCATTTATGAGTTCAAGATCAAAATTCGCTTTTC-AA-
1 TAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGCTTTTCAAAG
* * *
1121 TAAAATTGCTTTCCATTCGTGAGTTCAATATCAAAATTTGCTTTTCAAAG
1 TAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGCTTTTCAAAG
* * *
1171 TAAGATTGCATTCCATTTGTGAGTCCAAGATCAAAATTCGCTTTTCAAAG
1 TAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGCTTTTCAAAG
1221 GACATTGAAG
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 42 0.48
49 2 0.02
50 44 0.50
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (50 bp):
TAAAATTGCTTTCCATTTGTGAGTTCAAGATCAAAATTCGCTTTTCAAAG
Found at i:1973 original size:50 final size:50
Alignment explanation
Indices: 1891--2298 Score: 690
Period size: 50 Copynumber: 8.1 Consensus size: 50
1881 CGAATGCTAT
* *
1891 AGGCTTCTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAT
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
* * *
1941 AGCCTTTTCCACAAGCCGAACTCGTTTCCATACGACTCAATTATCAACAC
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
*
1991 AGGCTTTTCCACAAGCCGAACTCGTTTCCATACGAGTCAATTATCAACAC
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
*
2041 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTACCAACAC
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
* * *
2091 AGGCTTTTCCACAAGCCGAACTCATTTCCATACGAGTCAATTATCAACAT
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
* *
2141 AGACTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAAGAC
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
*
2191 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGGGTCAATTATCAACAC
1 AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
2241 AGGCTTTTCCACTAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
1 AGGCTTTTCCAC-AAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
2292 AGGCTTT
1 AGGCTTT
2299 AATGAGATTT
Statistics
Matches: 335, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
50 291 0.87
51 44 0.13
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.26
Consensus pattern (50 bp):
AGGCTTTTCCACAAGCCAAACTCGTTTCCATACGAGTCAATTATCAACAC
Found at i:11298 original size:27 final size:27
Alignment explanation
Indices: 11239--11313 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
11229 AATGAATTAA
*
11239 AAATGACTAAAGTGCCCCT-GAAGTAC
1 AAATGACTAAAATGCCCCTGGAAGTAC
* * *
11265 AAATGACCAAAATGCCCCTGGACGTGC
1 AAATGACTAAAATGCCCCTGGAAGTAC
11292 AAATGACTAAAATGCCCCTGGA
1 AAATGACTAAAATGCCCCTGGA
11314 TAACTTTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 17 0.40
27 26 0.60
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.17
Consensus pattern (27 bp):
AAATGACTAAAATGCCCCTGGAAGTAC
Found at i:13635 original size:19 final size:20
Alignment explanation
Indices: 13603--13640 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
13593 AATTAGGCAC
13603 GTGGAATTAATTTT-ACCAG
1 GTGGAATTAATTTTGACCAG
**
13622 GTGGAATTGTTTTTGACCA
1 GTGGAATTAATTTTGACCA
13641 CATGGATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (20 bp):
GTGGAATTAATTTTGACCAG
Found at i:22460 original size:48 final size:48
Alignment explanation
Indices: 22385--22500 Score: 178
Period size: 48 Copynumber: 2.4 Consensus size: 48
22375 CATTATCACT
*
22385 GCCCCACCCACTACCACCGCCACCACCACTACCAGCTTCGTTTCCACTGGC
1 GCCCCACCCACTACCA---CCACCACCACTACCAGCTTCGTTTCCACTAGC
*
22436 GCCCCACCCACTACCACCACCACCACTGCCAGCTTCGTTTCCACTAGC
1 GCCCCACCCACTACCACCACCACCACTACCAGCTTCGTTTCCACTAGC
*
22484 GCCCCACCCACTGCCAC
1 GCCCCACCCACTACCAC
22501 TTTCGGTACC
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
48 46 0.74
51 16 0.26
ACGTcount: A:0.20, C:0.54, G:0.11, T:0.15
Consensus pattern (48 bp):
GCCCCACCCACTACCACCACCACCACTACCAGCTTCGTTTCCACTAGC
Found at i:22521 original size:33 final size:33
Alignment explanation
Indices: 22457--22527 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
22447 TACCACCACC
* * *
22457 ACCACTGCCAGCTTCGTTTCCACTAGCGCCCCA
1 ACCACTGCCAGCTTCGGTACCACCAGCGCCCCA
* *
22490 CCCACTGCCA-CTTTCGGTACCACCAGTGCCCCA
1 ACCACTGCCAGC-TTCGGTACCACCAGCGCCCCA
22523 ACCAC
1 ACCAC
22528 CAGAATAAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.20, C:0.48, G:0.14, T:0.18
Consensus pattern (33 bp):
ACCACTGCCAGCTTCGGTACCACCAGCGCCCCA
Found at i:28291 original size:1 final size:1
Alignment explanation
Indices: 28247--28276 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
28237 CCCAAGAGAG
28247 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
28277 CCTCACCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:29119 original size:15 final size:15
Alignment explanation
Indices: 29099--29136 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
29089 GTACTTGAAT
29099 CCTGCCCTTGTTGAG
1 CCTGCCCTTGTTGAG
29114 CCTGCCCTTGTTGAG
1 CCTGCCCTTGTTGAG
29129 CCTGCCCT
1 CCTGCCCT
29137 CCTTTACCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.39, G:0.24, T:0.32
Consensus pattern (15 bp):
CCTGCCCTTGTTGAG
Found at i:40382 original size:31 final size:31
Alignment explanation
Indices: 40345--40416 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
40335 AGGCTAATTG
* *
40345 CTCAAATAAGGGCTTAACGTTTGTCAAAATA
1 CTCAAATAAGGGCCTAACGTTTGCCAAAATA
* * *
40376 TTCAAATAAGGGCCTACCGTTTGCCAAAATG
1 CTCAAATAAGGGCCTAACGTTTGCCAAAATA
40407 CTCAAATAAG
1 CTCAAATAAG
40417 AGTCCGATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (31 bp):
CTCAAATAAGGGCCTAACGTTTGCCAAAATA
Found at i:40894 original size:60 final size:60
Alignment explanation
Indices: 40821--41043 Score: 358
Period size: 60 Copynumber: 3.7 Consensus size: 60
40811 GCTAATTGCT
* * * * *
40821 CAAATAAGGGCCTAATGTT-TGCCAAAATGCTCAAATAAGGACCCGATCTTTTATTTTGGC
1 CAAATAAGGGCCTAACGTTAT-CGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
*
40881 CAAATAAGGGCCTAATGTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
*
40941 CAAATAAGGGCCTAACATTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
*
41001 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAAAAAGGGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCT
41044 TGGCGTCGAA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
60 153 0.99
61 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGGC
Found at i:40918 original size:31 final size:30
Alignment explanation
Indices: 40817--41042 Score: 112
Period size: 31 Copynumber: 7.5 Consensus size: 30
40807 GAAGGCTAAT
* *
40817 TGCTCAAATAAGGGCCTAATGTTTGCCAAAA
1 TGCTCAAATAAGGGCCTAATCTTT-CGAAAA
* ** * ***
40848 TGCTCAAATAAGGACCCGATCTTT-TATTT
1 TGCTCAAATAAGGGCCTAATCTTTCGAAAA
*
40877 TGGC-CAAATAAGGGCCTAATGTTATCGAAAA
1 T-GCTCAAATAAGGGCCTAATCTT-TCGAAAA
* * **
40908 TGCTCAAATAAGGG-CTCGATCTTT-TAATT
1 TGCTCAAATAAGGGCCT-AATCTTTCGAAAA
40937 TGGC-CAAATAAGGGCCTAA-CATTATCGAAAA
1 T-GCTCAAATAAGGGCCTAATC-TT-TCGAAAA
* * **
40968 TGCTCAAATAAGGG-CTCGATCTTT-TAATT
1 TGCTCAAATAAGGGCCT-AATCTTTCGAAAA
40997 TGGC-CAAATAAGGGCCTAA-CGTTATCGAAAA
1 T-GCTCAAATAAGGGCCTAATC-TT-TCGAAAA
*
41028 TGCTCAAAAAAGGGC
1 TGCTCAAATAAGGGC
41043 TTGGCGTCGA
Statistics
Matches: 142, Mismatches: 34, Indels: 38
0.66 0.16 0.18
Matches are distributed among these distances:
28 2 0.01
29 49 0.35
30 25 0.18
31 65 0.46
32 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (30 bp):
TGCTCAAATAAGGGCCTAATCTTTCGAAAA
Found at i:40951 original size:29 final size:29
Alignment explanation
Indices: 40912--41011 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
40902 CGAAAATGCT
40912 CAAATAAGGGCTCGATCTTTTAATTTGGC
1 CAAATAAGGGCTCGATCTTTTAATTTGGC
* * * **
40941 CAAATAAGGGC-CTAACATTATCGAAAAT-GC
1 CAAATAAGGGCTCGATC-TT-T-TAATTTGGC
40971 TCAAATAAGGGCTCGATCTTTTAATTTGGC
1 -CAAATAAGGGCTCGATCTTTTAATTTGGC
41001 CAAATAAGGGC
1 CAAATAAGGGC
41012 CTAACGTTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
28 3 0.05
29 27 0.49
30 6 0.11
31 16 0.29
32 3 0.05
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (29 bp):
CAAATAAGGGCTCGATCTTTTAATTTGGC
Found at i:41160 original size:59 final size:60
Alignment explanation
Indices: 41090--41246 Score: 219
Period size: 60 Copynumber: 2.6 Consensus size: 60
41080 GCCAGGCCCT
* * *
41090 TATTTGAGCATTTTCG-ATACATTAGGCCCTTATTTGACCAAATTAAAAGATC-GAACCCC
1 TATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAG-ACCCC
* * * *
41149 TATTTGAGCATTTTGGCAAACGGTAGGCCCTTATTTGGCCAAATTAGAAGATCAGACCCT
1 TATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGACCCC
*
41209 TATTTGAGCATTTTGGCAAAGGTTAGGCCCTTATTTGA
1 TATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGA
41247 GCAATTAGCC
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
59 15 0.17
60 70 0.81
61 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (60 bp):
TATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGACCCC
Found at i:41243 original size:31 final size:31
Alignment explanation
Indices: 41149--41249 Score: 102
Period size: 31 Copynumber: 3.3 Consensus size: 31
41139 ATCGAACCCC
41149 TATTTGAGCATTTTGGCAAACGG-TAGGCCCT
1 TATTTGAGCATTTTGGCAAA-GGTTAGGCCCT
** * * * *
41180 TATTTG-GCCAAATTAG--AAGATCAGACCCT
1 TATTTGAG-CATTTTGGCAAAGGTTAGGCCCT
41209 TATTTGAGCATTTTGGCAAAGGTTAGGCCCT
1 TATTTGAGCATTTTGGCAAAGGTTAGGCCCT
41240 TATTTGAGCA
1 TATTTGAGCA
41250 ATTAGCCAAC
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
28 1 0.02
29 19 0.36
30 2 0.04
31 31 0.58
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (31 bp):
TATTTGAGCATTTTGGCAAAGGTTAGGCCCT
Found at i:41973 original size:31 final size:31
Alignment explanation
Indices: 41936--42007 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
41926 AGGCTAATTG
*
41936 CTCAAATAAGGGCTTAACGTTTGCCAAAATA
1 CTCAAATAAGGGCCTAACGTTTGCCAAAATA
* * *
41967 TTCAAATAAGGGCCTACCGTTTGCCAAAATG
1 CTCAAATAAGGGCCTAACGTTTGCCAAAATA
41998 CTCAAATAAG
1 CTCAAATAAG
42008 AGTCCGATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (31 bp):
CTCAAATAAGGGCCTAACGTTTGCCAAAATA
Done.