Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014438.1 Corchorus olitorius cultivar O-4 contig14471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2960
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:2364 original size:22 final size:22

Alignment explanation


    Indices: 2337--2393  Score: 114
    Period size: 22  Copynumber: 2.6  Consensus size: 22

       2327 TGTCGACGGT

                                  
       2337 TTGCTTCCTCTTGAGTCGACTA
          1 TTGCTTCCTCTTGAGTCGACTA

                                  
       2359 TTGCTTCCTCTTGAGTCGACTA
          1 TTGCTTCCTCTTGAGTCGACTA

                         
       2381 TTGCTTCCTCTTG
          1 TTGCTTCCTCTTG

       2394 CTTCCTTAGT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   35  1.00

ACGTcount: A:0.11, C:0.28, G:0.18, T:0.44


Consensus pattern (22 bp):   
TTGCTTCCTCTTGAGTCGACTA
Done.