Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014441.1 Corchorus olitorius cultivar O-4 contig14474, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38373

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2309--2374
34
1.9
35
87
3
98
24
7
9
59
1.54
2891--3300
203
2.0
201
94
2
723
44
8
10
37
1.69
3707--3749
2
21.5
2
90
9
70
48
0
2
48
1.14
3707--3749
17
2.5
17
92
7
70
48
0
2
48
1.14
4566--4675
49
2.3
47
87
6
161
34
7
20
37
1.81
4796--4858
31
2.0
31
93
0
108
52
14
14
19
1.75
4886--4930
16
2.8
17
83
16
60
42
0
2
55
1.12
5313--7085
333
5.4
330
76
10
1425
33
13
15
37
1.87
6999--7343
172
2.0
173
89
3
534
31
18
15
34
1.92
7170--9569
331
7.3
326
78
9
2140
33
13
15
37
1.87
13508--13556
26
1.9
26
91
4
82
38
18
4
38
1.70
29089--29118
15
1.9
16
93
6
53
66
3
0
30
1.07
29085--29128
15
2.7
15
82
10
52
70
4
0
25
1.06
29883--29965
30
2.7
32
75
9
100
37
14
22
25
1.92
30107--30181
30
2.5
31
84
2
98
26
29
17
26
1.97
30233--30277
17
2.6
17
86
10
56
4
8
0
86
0.69
30232--30278
15
3.1
16
82
17
55
8
8
0
82
0.83
36911--37063
74
2.1
74
97
0
288
19
25
9
45
1.81

Tables:   1

The End!