Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014442.1 Corchorus olitorius cultivar O-4 contig14475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8794
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:1545 original size:47 final size:47

Alignment explanation


    Indices: 1476--1572  Score: 194
    Period size: 47  Copynumber: 2.1  Consensus size: 47

       1466 CCAATTATCA

                                                           
       1476 TTTATGCTATTGTATTGACCCATTAAAGCCTTTAAAAACTTATTTCC
          1 TTTATGCTATTGTATTGACCCATTAAAGCCTTTAAAAACTTATTTCC

                                                           
       1523 TTTATGCTATTGTATTGACCCATTAAAGCCTTTAAAAACTTATTTCC
          1 TTTATGCTATTGTATTGACCCATTAAAGCCTTTAAAAACTTATTTCC

               
       1570 TTT
          1 TTT

       1573 CAGTTGTAAT


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   50  1.00

ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44


Consensus pattern (47 bp):   
TTTATGCTATTGTATTGACCCATTAAAGCCTTTAAAAACTTATTTCC
Done.