Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014444.1 Corchorus olitorius cultivar O-4 contig14477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55730

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4163--4212
25
2.0
25
100
0
100
32
28
8
32
1.86
6342--6390
19
2.4
20
80
13
55
24
2
6
67
1.24
10984--11034
24
2.1
25
85
3
68
70
3
7
17
1.27
13174--13230
27
2.1
27
90
0
87
40
28
15
15
1.88
13182--13279
27
3.6
27
78
5
99
40
26
16
16
1.89
14086--14135
23
2.0
23
85
11
64
62
0
26
12
1.30
22771--22806
18
2.0
18
88
0
54
55
2
36
5
1.38
23786--23997
34
5.9
34
76
12
192
28
14
18
38
1.90
23820--23954
72
1.9
73
88
1
209
29
14
17
39
1.88
35942--35986
21
2.2
20
88
11
65
15
17
4
62
1.49
45583--45607
3
8.3
3
100
0
50
0
0
64
36
0.94
46628--46655
11
2.5
11
100
0
56
17
0
0
82
0.68

Tables:   1

The End!