Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014446.1 Corchorus olitorius cultivar O-4 contig14479, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5367
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34


Found at i:298 original size:3 final size:3

Alignment explanation


    Indices: 285--372  Score: 167
    Period size: 3  Copynumber: 29.0  Consensus size: 3

        275 ACTTCTATAC

                                                                        
        285 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

                                                                   
        331 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

        373 GTAACCTTAA


Statistics
Matches: 84,  Mismatches: 0, Indels: 2
        0.98            0.00        0.02

Matches are distributed among these distances:
   3   81  0.96
   4    3  0.04

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
TAA

Done.