Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014449.1 Corchorus olitorius cultivar O-4 contig14482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34703

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1234--1285
24
2.2
24
93
3
88
9
7
25
57
1.57
1490--1911
30
13.8
30
84
3
502
31
17
18
31
1.94
1786--1892
32
3.3
32
74
7
99
36
15
13
34
1.87
3943--4006
33
1.9
33
87
0
92
31
23
20
25
1.98
13619--13681
32
2.0
32
87
3
92
25
11
14
49
1.76
18898--19222
159
2.0
159
100
0
650
40
19
14
26
1.89
20066--20133
34
2.0
34
100
0
136
50
14
14
20
1.78
20432--20495
29
2.2
29
86
8
87
26
7
14
51
1.69
20612--20661
25
1.9
27
88
8
77
68
2
0
30
1.01
20884--20926
22
2.0
22
86
9
61
37
11
20
30
1.89
25394--25431
20
1.9
20
89
10
60
44
7
7
39
1.63
25497--25926
146
2.9
146
83
3
481
30
12
19
37
1.89
27229--27275
12
3.6
13
82
8
60
57
10
0
31
1.33
27452--27494
13
3.3
13
81
9
52
60
16
6
16
1.56
32888--32925
2
19.0
2
94
0
67
50
2
0
47
1.15
33793--33939
22
6.8
21
69
10
84
36
8
14
40
1.77
33998--34030
2
16.5
2
93
0
57
45
0
0
54
0.99

Tables:   1

The End!