Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014451.1 Corchorus olitorius cultivar O-4 contig14484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88929

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
679--714
18
1.9
18
88
5
54
63
8
16
11
1.49
3201--3242
15
2.7
15
92
3
66
11
9
14
64
1.50
5071--5099
15
1.9
15
100
0
58
34
3
6
55
1.44
7136--7474
178
1.9
178
87
4
506
33
13
15
36
1.87
8177--8203
7
3.9
7
100
0
54
25
29
29
14
1.95
23835--23897
32
2.0
32
90
0
99
31
25
9
33
1.88
31425--31450
3
8.7
3
100
0
52
34
0
0
65
0.93
35195--35227
13
2.8
12
90
9
50
60
0
39
0
0.97
36759--36801
22
2.0
22
85
0
59
25
11
4
58
1.52
37091--37423
123
2.7
123
97
0
630
37
10
1
50
1.45
39097--39130
2
16.5
2
93
6
59
47
0
2
50
1.16
49919--50024
53
2.0
53
100
0
212
41
20
13
24
1.88
49933--50017
25
3.3
25
64
20
66
44
17
12
24
1.84
56012--56055
16
2.6
17
80
16
56
61
22
0
15
1.34
60437--60465
15
1.9
15
100
0
58
6
62
10
20
1.50
65007--65033
13
2.1
13
100
0
54
44
0
0
55
0.99
65003--65035
17
1.9
17
93
0
57
42
0
0
57
0.98
72992--73127
67
2.0
67
100
0
272
32
11
7
49
1.66
78436--78569
3
43.3
3
78
10
94
35
5
1
56
1.33
78372--78568
94
2.1
95
94
1
342
37
8
2
52
1.45
79933--80078
63
2.3
64
84
13
178
39
7
15
38
1.75
79884--80366
22
22.1
22
71
12
196
37
7
15
38
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79933--80195
46
6.0
41
72
17
135
35
9
16
38
1.81
80060--80169
46
2.4
45
86
6
141
33
11
14
40
1.83
80328--80365
19
2.0
20
89
5
60
44
7
5
42
1.56
82178--82241
31
2.1
31
100
0
128
28
15
18
37
1.92
83134--83191
28
2.0
29
86
3
82
43
12
5
39
1.64
85143--85433
161
1.8
161
84
3
406
47
13
26
12
1.78

Tables:   1

The End!