Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014456.1 Corchorus olitorius cultivar O-4 contig14489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9470
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:624 original size:11 final size:11

Alignment explanation


    Indices: 607--638  Score: 55
    Period size: 11  Copynumber: 2.9  Consensus size: 11

        597 ACAGCGCAAA

                       
        607 AAAAACAAAAC
          1 AAAAACAAAAC

            *          
        618 GAAAACAAAAC
          1 AAAAACAAAAC

                      
        629 AAAAACAAAA
          1 AAAAACAAAA

        639 AACAGAAAAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.81, C:0.16, G:0.03, T:0.00


Consensus pattern (11 bp):   
AAAAACAAAAC

Found at i:2372 original size:2 final size:2

Alignment explanation


    Indices: 2361--2392  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       2351 TAATTAATTC

                                                             
       2361 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2393 GTATGCAATA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   28  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.