Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014458.1 Corchorus olitorius cultivar O-4 contig14491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2879
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--41  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

                                                                         
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

         42 AACAATGAGA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:1511 original size:17 final size:18

Alignment explanation


    Indices: 1479--1513  Score: 54
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1469 TTATAAAAAT

                               
       1479 AAAAAGAATTAAAGAAAGG
          1 AAAAAGAA-TAAAGAAAGG

                             
       1498 AAAAAGAA-AAAGAAAG
          1 AAAAAGAATAAAGAAAG

       1514 AAGACAAAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    8  0.50
  19    8  0.50

ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06


Consensus pattern (18 bp):   
AAAAAGAATAAAGAAAGG
Done.