Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014463.1 Corchorus olitorius cultivar O-4 contig14496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51527

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1826--2261
47
9.9
47
84
9
521
38
11
13
35
1.82
1959--2211
87
2.8
87
93
4
425
38
13
15
33
1.86
2865--3211
159
2.2
159
95
2
617
33
17
20
28
1.95
3143--3278
67
2.0
68
98
1
265
40
14
19
25
1.90
2984--3437
226
2.0
227
98
0
883
35
16
20
27
1.95
3211--3531
159
2.0
158
98
0
624
33
17
20
28
1.96
5040--5322
84
3.4
84
88
1
422
23
22
20
33
1.97
21523--21569
24
2.0
24
95
0
85
51
8
19
21
1.73
34663--34695
17
1.9
17
88
11
50
3
9
21
66
1.33
42508--42567
5
12.4
5
94
1
97
81
0
18
0
0.69
48602--48651
26
1.9
26
91
0
82
34
16
22
28
1.95

Tables:   1

The End!