Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014466.1 Corchorus olitorius cultivar O-4 contig14499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2916
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:290 original size:18 final size:18

Alignment explanation


    Indices: 247--290  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        237 ATATTTAATT

                              
        247 CTAATTTTAATTTTATTA
          1 CTAATTTTAATTTTATTA

            *  *               
        265 TTATTTTTAA-TTTATATA
          1 CTAATTTTAATTTTAT-TA

                    
        283 CTAATTTT
          1 CTAATTTT

        291 TCTTTGATTT


Statistics
Matches: 21,  Mismatches: 4, Indels: 2
        0.78            0.15        0.07

Matches are distributed among these distances:
  17    5  0.24
  18   16  0.76

ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64


Consensus pattern (18 bp):   
CTAATTTTAATTTTATTA

Found at i:395 original size:21 final size:21

Alignment explanation


    Indices: 371--430  Score: 120
    Period size: 21  Copynumber: 2.9  Consensus size: 21

        361 GCCGAATTAA

                                 
        371 GGAATTAAGGAATTTTTCATT
          1 GGAATTAAGGAATTTTTCATT

                                 
        392 GGAATTAAGGAATTTTTCATT
          1 GGAATTAAGGAATTTTTCATT

                              
        413 GGAATTAAGGAATTTTTC
          1 GGAATTAAGGAATTTTTC

        431 CCATAGTGAT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   39  1.00

ACGTcount: A:0.33, C:0.05, G:0.20, T:0.42


Consensus pattern (21 bp):   
GGAATTAAGGAATTTTTCATT
Done.