Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014468.1 Corchorus olitorius cultivar O-4 contig14501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51167

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6908--6946
19
2.1
19
100
0
78
48
20
0
30
1.50
9393--9452
29
2.1
29
93
0
102
41
15
3
40
1.63
11967--12000
17
2.0
17
94
0
59
38
8
0
52
1.33
13455--13509
26
2.0
27
86
10
76
49
27
10
12
1.74
19393--19430
20
1.9
20
94
0
67
15
5
18
60
1.53
19392--19436
20
2.3
20
84
3
65
13
6
15
64
1.47
28829--29402
300
1.9
300
97
0
1078
27
22
12
38
1.90
39793--39840
24
2.0
24
95
0
87
0
14
41
43
1.45
40939--41002
31
2.1
29
88
5
92
29
26
12
31
1.93
40939--41013
31
2.5
31
84
4
82
28
24
12
36
1.91
42250--42300
19
2.7
19
77
14
61
47
0
1
50
1.12

Tables:   1

The End!